miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37168_dse-mir-287:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgtagggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtagggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttg 60
Query: 61 cacgactgtga 71
|||||||||||
Sbjct: 61 cacgactgtga 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>36438_dme-mir-287:mirbase
Length = 93
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 tgtagggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tgtagggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttg 82
Query: 61 cacgactgtga 71
|||||||||||
Sbjct: 83 cacgactgtga 93
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>36208_der-mir-287:mirbase
Length = 90
Score = 115 bits (58), Expect = 4e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 87
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 66 acacatttacaattattgtaaatgtgt 40
>36130_dan-mir-287:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 5 gggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 64
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcaca 68
Query: 65 actgt 69
|||||
Sbjct: 69 actgt 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 51 acacatttacaattattgtaaatgtgt 25
>36962_dps-mir-287:mirbase
Length = 80
Score = 113 bits (57), Expect = 2e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgtg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 20 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgtg 79
Query: 71 a 71
|
Sbjct: 80 a 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>37537_dya-mir-287:mirbase
Length = 77
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 5 gggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 64
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 11 gggtctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatg 70
Query: 65 actgtga 71
|||||||
Sbjct: 71 actgtga 77
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| | |||||||||||
Sbjct: 53 acacatttacaattactgtaaatgtgt 27
>36298_dgr-mir-287-1:mirbase
Length = 73
Score = 105 bits (53), Expect = 4e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgtg 70
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 13 gaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgtg 72
Query: 71 a 71
|
Sbjct: 73 a 73
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
|||||||||||| |||||||||||||
Sbjct: 49 acacatttacaaatattgtaaatgtgt 23
>36299_dgr-mir-287-2:mirbase
Length = 73
Score = 105 bits (53), Expect = 4e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgtg 70
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 13 gaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgtg 72
Query: 71 a 71
|
Sbjct: 73 a 73
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
|||||||||||| |||||||||||||
Sbjct: 49 acacatttacaaatattgtaaatgtgt 23
>36805_dmo-mir-287:mirbase
Length = 62
Score = 105 bits (53), Expect = 4e-24
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 60
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 44 acacatttacaattattgtaaatgtgt 18
>36881_dpe-mir-287:mirbase
Length = 75
Score = 105 bits (53), Expect = 4e-24
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>37382_dvi-mir-287:mirbase
Length = 68
Score = 105 bits (53), Expect = 4e-24
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 50 acacatttacaattattgtaaatgtgt 24
>37461_dwi-mir-287:mirbase
Length = 73
Score = 97.6 bits (49), Expect = 1e-21
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 63
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 17 gaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcac 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
|||||||||||||||||||||||||||
Sbjct: 53 acacatttacaataattgtaaatgtgt 27
