miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37169_dse-mir-288:mirbase
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 cggtcatgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggtcatgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcac 60
Query: 61 gttggtttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttggtttcatgtcgatttcatttcatgacacggccg 97
>37538_dya-mir-288:mirbase
Length = 96
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 1 cggtcatgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcac 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 cggtcatgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcac 60
Query: 61 gttggtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttggtttcatgtcgatttcatttcatgacacggcc 96
>36439_dme-mir-288:mirbase
Length = 97
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
Query: 65 gtttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggccg 97
>36209_der-mir-288:mirbase
Length = 97
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 cggtcatgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcac 60
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 1 cggtcatgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcac 60
Query: 61 gttggtttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||||||| ||||||||||
Sbjct: 61 gttggtttcatgtcgatttcatttcaggacacggccg 97
>36131_dan-mir-288:mirbase
Length = 92
Score = 143 bits (72), Expect = 3e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||| | |||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
Query: 65 gtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||
Sbjct: 61 gtttcatgtcgatttcatttcatgacacggcc 92
>36963_dps-mir-288:mirbase
Length = 96
Score = 137 bits (69), Expect = 2e-33
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||| | | || || |||||||||||||||||||||| |||||||||||
Sbjct: 4 catgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttg 63
Query: 65 gtttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||||||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggccg 96
>36806_dmo-mir-288:mirbase
Length = 96
Score = 131 bits (66), Expect = 1e-31
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 8 gtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttggtt 67
|||||||||||| | |||| || |||| ||||||||||||||||| ||||||||||||||
Sbjct: 7 gtcgtaattagctgtgcacagcgttgctggcgataattaatgacgttggtcacgttggtt 66
Query: 68 tcatgtcgatttcatttcatgacacggccg 97
||||||||||||||||||||||||||||||
Sbjct: 67 tcatgtcgatttcatttcatgacacggccg 96
>36882_dpe-mir-288:mirbase
Length = 96
Score = 129 bits (65), Expect = 4e-31
Identities = 86/93 (92%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||| | | || || |||||||||| ||||||||||| |||||||||||
Sbjct: 4 catgtcgtaattagcagggtacagcgttgccggcgaaaattaatgacgttggtcacgttg 63
Query: 65 gtttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||||||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggccg 96
>37462_dwi-mir-288:mirbase
Length = 94
Score = 117 bits (59), Expect = 2e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacgg 94
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
Query: 95 ccg 97
|||
Sbjct: 92 ccg 94
>36300_dgr-mir-288:mirbase
Length = 96
Score = 115 bits (58), Expect = 6e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 36 ggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacggc 95
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 94
Query: 96 cg 97
||
Sbjct: 95 cg 96
>37383_dvi-mir-288:mirbase
Length = 97
Score = 115 bits (58), Expect = 6e-27
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 8 gtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttggtt 67
|||||||||||| | |||| | |||| |||||||||||||||| ||||||||||||||
Sbjct: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
Query: 68 tcatgtcgatttcatttcatgacacggccg 97
||||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggccg 97
