miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36229_der-mir-318:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>36473_dme-mir-318:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>36474_dme-mir-318:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>37185_dse-mir-318:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>37556_dya-mir-318:mirbase
Length = 68
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>36894_dpe-mir-318:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 5e-17
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
|||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>36977_dps-mir-318:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 5e-17
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
|||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>36312_dgr-mir-318:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 8e-13
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacacttt-aagcatcactgggctttgttta 59
|||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcat 65
||||||
Sbjct: 61 tctcat 66
>36818_dmo-mir-318:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 8e-13
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacacttt-aagcatcactgggctttgttta 59
|||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 1 tttatgggatacactaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcat 65
||||||
Sbjct: 61 tctcat 66
>37397_dvi-mir-318:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 8e-13
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacacttt-aagcatcactgggctttgttta 59
|||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcat 65
||||||
Sbjct: 61 tctcat 66
>37474_dwi-mir-318-1:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 1e-11
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacacttta--agcatcactgggctttgttt 58
|||||||||||||| |||||||||||||| || | | ||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60
Query: 59 atctcat 65
|||||||
Sbjct: 61 atctcat 67
>37475_dwi-mir-318-2:mirbase
Length = 69
Score = 63.9 bits (32), Expect = 1e-11
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacacttta--agcatcactgggctttgttt 58
|||||||||||||| |||||||||||||| || | | ||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60
Query: 59 atctcat 65
|||||||
Sbjct: 61 atctcat 67
>36147_dan-mir-318:mirbase
Length = 69
Score = 60.0 bits (30), Expect = 2e-10
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 5 tgggatacacacagttcagttttgtcacacttta-agcatcactgggctttgtttatctc 63
|||||||||||| |||||||| |||||| || |||||||||||||||||||||||||
Sbjct: 5 tgggatacacacggttcagttgtgtcacttttgcgagcatcactgggctttgtttatctc 64
Query: 64 at 65
||
Sbjct: 65 at 66
