miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37283_dsi-mir-978a:mirbase
          Length = 86

 Score =  168 bits (85), Expect = 4e-43
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                      
Query: 1  gcgtccacacaactgcaatatacggcactggacacgattctcgaccacaacgtaagccag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 gcgtccacacaactgcaatatacggcactggacacgattctcgaccacaacgtaagccag 26

                                   
Query: 61 tggcgtagattgcagattgtgccgc 85
          |||||||||||||||||||||||||
Sbjct: 25 tggcgtagattgcagattgtgccgc 1




>36531_dme-mir-978:mirbase
          Length = 92

 Score =  123 bits (62), Expect = 2e-29
 Identities = 80/86 (93%)
 Strand = Plus / Minus

                                                                      
Query: 1  gcgtccacacaactgcaatatacggcactggacacgattctcgaccacaacgtaagccag 60
          |||| |||||||||||||| ||||||||||||||||||| ||||   |||||||||||||
Sbjct: 89 gcgttcacacaactgcaatttacggcactggacacgattttcgattgcaacgtaagccag 30

                                    
Query: 61 tggcgtagattgcagattgtgccgcc 86
          ||||||||||||||||||||||||||
Sbjct: 29 tggcgtagattgcagattgtgccgcc 4




>36532_dme-mir-978:mirbase
          Length = 92

 Score =  123 bits (62), Expect = 2e-29
 Identities = 80/86 (93%)
 Strand = Plus / Minus

                                                                      
Query: 1  gcgtccacacaactgcaatatacggcactggacacgattctcgaccacaacgtaagccag 60
          |||| |||||||||||||| ||||||||||||||||||| ||||   |||||||||||||
Sbjct: 89 gcgttcacacaactgcaatttacggcactggacacgattttcgattgcaacgtaagccag 30

                                    
Query: 61 tggcgtagattgcagattgtgccgcc 86
          ||||||||||||||||||||||||||
Sbjct: 29 tggcgtagattgcagattgtgccgcc 4