miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36563_dme-mir-993:mirbase
Length = 119
Score = 210 bits (106), Expect = 2e-55
Identities = 112/114 (98%)
Strand = Plus / Plus
Query: 1 ctcccgtgacctaccctgtagttccgggcttttgtttaaatggcgttcggcgcattgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5 ctcccgtgacctaccctgtagttccgggcttttgtttaaatggcgttcggcacattgtcg 64
Query: 61 gattgctggctcgattatcagaagctcgtctctacaggtatctcacagggtaga 114
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gactgctggctcgattatcagaagctcgtctctacaggtatctcacagggtaga 118
>36564_dme-mir-993:mirbase
Length = 119
Score = 210 bits (106), Expect = 2e-55
Identities = 112/114 (98%)
Strand = Plus / Plus
Query: 1 ctcccgtgacctaccctgtagttccgggcttttgtttaaatggcgttcggcgcattgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5 ctcccgtgacctaccctgtagttccgggcttttgtttaaatggcgttcggcacattgtcg 64
Query: 61 gattgctggctcgattatcagaagctcgtctctacaggtatctcacagggtaga 114
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gactgctggctcgattatcagaagctcgtctctacaggtatctcacagggtaga 118
>36997_dps-mir-993:mirbase
Length = 114
Score = 107 bits (54), Expect = 2e-24
Identities = 99/114 (86%)
Strand = Plus / Plus
Query: 1 ctcccgtgacctaccctgtagttccgggcttttgtttaaatggcgttcggcgcattgtcg 60
|||||||||||||||||||||||||||||||||||||| || ||| || | ||| |||
Sbjct: 1 ctcccgtgacctaccctgtagttccgggcttttgtttatattgcgcccgatgtattttcg 60
Query: 61 gattgctggctcgattatcagaagctcgtctctacaggtatctcacagggtaga 114
| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtgtttgtgtcgattatcagaagctcgtctctacaggtatctcacagggtaga 114
>35241_aae-mir-993:mirbase
Length = 101
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 4 ccgtgacctaccctgtagttccgggcttttgt 35
||||||||||||||||||||||||||||||||
Sbjct: 10 ccgtgacctaccctgtagttccgggcttttgt 41
Score = 42.1 bits (21), Expect = 9e-05
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 74 attatcagaagctcg--tctctacaggtatctcacagggt 111
||||||||||||||| ||| || ||||||||||||||||
Sbjct: 59 attatcagaagctcgtttctatagaggtatctcacagggt 98
>35327_aga-mir-993:mirbase
Length = 120
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 4 ccgtgacctaccctgtagttccgggcttttgt 35
||||||||||||||||||||||||||||||||
Sbjct: 10 ccgtgacctaccctgtagttccgggcttttgt 41
>36057_cqu-mir-993:mirbase
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 4 ccgtgacctaccctgtagttccgggcttttgt 35
||||||||||||||||||||||||||||||||
Sbjct: 10 ccgtgacctaccctgtagttccgggcttttgt 41
Score = 42.1 bits (21), Expect = 9e-05
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 74 attatcagaagctcg--tctctacaggtatctcacagggt 111
||||||||||||||| ||| || ||||||||||||||||
Sbjct: 57 attatcagaagctcgtttctatagaggtatctcacagggt 96
>35578_bmo-mir-993a:mirbase
Length = 88
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 77 atcagaagctcgtctctacaggtatctcac 106
||||||||||||||||||||||||||||||
Sbjct: 51 atcagaagctcgtctctacaggtatctcac 80
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 5 cgtgacctaccctgtagttccgggcttttgt 35
||||| ||||||||||| |||||||||||||
Sbjct: 9 cgtgatctaccctgtagatccgggcttttgt 39
>35409_ame-mir-993:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 76 tatcagaagctcgtctctacaggtatct 103
||||||||||||||||||||||||||||
Sbjct: 51 tatcagaagctcgtctctacaggtatct 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 5 cgtgacctaccctgtagttccgggcttttgt 35
||||| ||||||||||| |||||||||||||
Sbjct: 9 cgtgatctaccctgtagatccgggcttttgt 39
>37597_ngi-mir-993:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 76 tatcagaagctcgtctctacaggtatct 103
||||||||||||||||||||||||||||
Sbjct: 47 tatcagaagctcgtctctacaggtatct 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 cgtgacctaccctgtagttccgggcttt 32
||||| ||||||||||| ||||||||||
Sbjct: 7 cgtgatctaccctgtagatccgggcttt 34
>37627_nlo-mir-993:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 76 tatcagaagctcgtctctacaggtatct 103
||||||||||||||||||||||||||||
Sbjct: 51 tatcagaagctcgtctctacaggtatct 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gtgacctaccctgtagttccgggcttttgt 35
|||| ||||||||||| |||||||||||||
Sbjct: 10 gtgatctaccctgtagatccgggcttttgt 39
>37675_nvi-mir-993:mirbase
Length = 119
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 76 tatcagaagctcgtctctacaggtatct 103
||||||||||||||||||||||||||||
Sbjct: 80 tatcagaagctcgtctctacaggtatct 107
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 5 cgtgacctaccctgtagttccgggcttttgt 35
||||| ||||||||||| |||||||||||||
Sbjct: 38 cgtgatctaccctgtagatccgggcttttgt 68
>37822_tca-mir-993:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 atcagaagctcgtctctacaggtatct 103
|||||||||||||||||||||||||||
Sbjct: 51 atcagaagctcgtctctacaggtatct 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 ccgtgacctaccctgtagttccgggcttttgt 35
|||||| ||||||||||| |||||||||||||
Sbjct: 8 ccgtgatctaccctgtagatccgggcttttgt 39
>37823_tca-mir-993:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 atcagaagctcgtctctacaggtatct 103
|||||||||||||||||||||||||||
Sbjct: 51 atcagaagctcgtctctacaggtatct 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 ccgtgacctaccctgtagttccgggcttttgt 35
|||||| ||||||||||| |||||||||||||
Sbjct: 8 ccgtgatctaccctgtagatccgggcttttgt 39
>35094_api-mir-993:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 tcagaagctcgtctctacaggtatct 103
||||||||||||||||||||||||||
Sbjct: 52 tcagaagctcgtctctacaggtatct 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 ccgtgacctaccctgtagttccgggcttttgt 35
|||||| ||||||||||| |||||||||||||
Sbjct: 4 ccgtgatctaccctgtagatccgggcttttgt 35
>35037_dpu-mir-993:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 atcagaagctcgtctctacaggtatct 103
||||||||||||| |||||||||||||
Sbjct: 57 atcagaagctcgtttctacaggtatct 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 taccctgtagttccgggcttttgttt 37
|||||||||| |||||||||||||||
Sbjct: 20 taccctgtagctccgggcttttgttt 45
>34990_isc-mir-993:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 tcagaagctcgtctctacaggtatct 103
|||||||||||| |||||||||||||
Sbjct: 58 tcagaagctcgtttctacaggtatct 83
>35579_bmo-mir-993b:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 82 aagctcgtctctacaggtatctcac 106
|||||||||||||||||||| ||||
Sbjct: 54 aagctcgtctctacaggtatatcac 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 cgtgacctaccctgtagttccgggcttt 32
||||| ||||||||||| ||||||||||
Sbjct: 9 cgtgatctaccctgtagatccgggcttt 36
