miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36577_dme-mir-1000:mirbase
Length = 100
Score = 190 bits (96), Expect = 2e-49
Identities = 99/100 (99%)
Strand = Plus / Plus
Query: 12 gacgcttgccattgatattgtcctgtcacagcagtattgttacactatattatagtttac 71
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gacgcttgccattgatattgtcctgtcacagcagtattgtaacactatattatagtttac 60
Query: 72 tgctgggtcggggcattaacattgttgagcgtcattagca 111
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctgggtcggggcattaacattgttgagcgtcattagca 100
>36578_dme-mir-1000:mirbase
Length = 100
Score = 190 bits (96), Expect = 2e-49
Identities = 99/100 (99%)
Strand = Plus / Plus
Query: 12 gacgcttgccattgatattgtcctgtcacagcagtattgttacactatattatagtttac 71
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gacgcttgccattgatattgtcctgtcacagcagtattgtaacactatattatagtttac 60
Query: 72 tgctgggtcggggcattaacattgttgagcgtcattagca 111
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctgggtcggggcattaacattgttgagcgtcattagca 100
>37000_dps-mir-1000:mirbase
Length = 91
Score = 115 bits (58), Expect = 8e-27
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 14 cgcttgccattgatattgtcctgtcacagcagtattgttacactatattatagtttactg 73
|||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 3 cgcttgccattgatattgtcctgtcacagcagtattgt--aacttaattatagcctactg 60
Query: 74 ctgggtcggggcattaacattgttgagcg 102
|||||||||||||||||||||||||||||
Sbjct: 61 ctgggtcggggcattaacattgttgagcg 89
>35245_aae-mir-1000-1:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 26 atattgtcctgtcacagcagtattgttaca 55
|||||||||||||||||||||| |||||||
Sbjct: 23 atattgtcctgtcacagcagtactgttaca 52
>35246_aae-mir-1000-2:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 26 atattgtcctgtcacagcagtattgttaca 55
|||||||||||||||||||||| |||||||
Sbjct: 23 atattgtcctgtcacagcagtactgttaca 52
>35329_aga-mir-1000:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 tgatattgtcctgtcacagcagta 47
||||||||||||||||||||||||
Sbjct: 13 tgatattgtcctgtcacagcagta 36
>37828_tca-mir-1000:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 tgatattgtcctgtcacagcagta 47
||||||||||||||||||||||||
Sbjct: 13 tgatattgtcctgtcacagcagta 36
>37829_tca-mir-1000:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 tgatattgtcctgtcacagcagta 47
||||||||||||||||||||||||
Sbjct: 13 tgatattgtcctgtcacagcagta 36
>35098_api-mir-1000:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 atattgtcctgtcacagcagta 47
||||||||||||||||||||||
Sbjct: 1 atattgtcctgtcacagcagta 22
>35581_bmo-mir-1000:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 atattgtcctgtcacagcagta 47
||||||||||||||||||||||
Sbjct: 15 atattgtcctgtcacagcagta 36
>36061_cqu-mir-1000:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 atattgtcctgtcacagcagta 47
||||||||||||||||||||||
Sbjct: 19 atattgtcctgtcacagcagta 40
