miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36831_dpe-mir-5:mirbase
Length = 72
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 ctaaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttc 60
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 2 ctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttc 61
Query: 61 ctttatagcg 70
||||||||||
Sbjct: 62 ctttatagcg 71
>36907_dps-mir-5:mirbase
Length = 72
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 ctaaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttc 60
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 2 ctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttc 61
Query: 61 ctttatagcg 70
||||||||||
Sbjct: 62 ctttatagcg 71
>36244_dgr-mir-5-1:mirbase
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 ctaaaaggaacgatcgttgtgatatgcgttcatt-aaccgttacatatcacagtgatttt 59
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 2 ctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgatttt 61
Query: 60 cctttatagcg 70
|||||||||||
Sbjct: 62 cctttatagcg 72
>36245_dgr-mir-5-2:mirbase
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 ctaaaaggaacgatcgttgtgatatgcgttcatt-aaccgttacatatcacagtgatttt 59
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 2 ctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgatttt 61
Query: 60 cctttatagcg 70
|||||||||||
Sbjct: 62 cctttatagcg 72
>36758_dmo-mir-5:mirbase
Length = 72
Score = 115 bits (58), Expect = 4e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1 ctaaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttc 60
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 2 ctaaaaggaacgatcgttgtgatatgcgttaatcgaccgttacatatcacagtgattttc 61
Query: 61 ctttatagcg 70
||||||||||
Sbjct: 62 ctttatagcg 71
>37409_dwi-mir-5:mirbase
Length = 73
Score = 101 bits (51), Expect = 6e-23
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 ctaaaaggaacgatcgttgtgatatgcgttc-attaaccgttacatatcacagtgatttt 59
|||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct: 2 ctaaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgatttt 61
Query: 60 cctttatagcg 70
|||||||||||
Sbjct: 62 cctttatagcg 72
>36082_dan-mir-5:mirbase
Length = 67
Score = 91.7 bits (46), Expect = 6e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 2 taaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttcc 61
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtttatccctcgttacatatcacagtgattttcc 60
Query: 62 tttata 67
||||||
Sbjct: 61 tttata 66
>37488_dya-mir-5:mirbase
Length = 64
Score = 77.8 bits (39), Expect = 9e-16
Identities = 61/66 (92%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 2 taaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttcc 61
||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtt-att--ccctaacatatcacagtgattttcc 57
Query: 62 tttata 67
||||||
Sbjct: 58 tttata 63
>36160_der-mir-5:mirbase
Length = 64
Score = 71.9 bits (36), Expect = 5e-14
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 2 taaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttcc 61
||||||||||||||||||||||||||||| | || | ||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgttgtt---ccctaacatatcacagtgattttcc 57
Query: 62 tttata 67
||||||
Sbjct: 58 tttata 63
>36335_dme-mir-5:mirbase
Length = 69
Score = 65.9 bits (33), Expect = 3e-12
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 1 ctaaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttc 60
|||||||||||||||||||||||||| ||| || | | |||||||||||||||||||
Sbjct: 2 ctaaaaggaacgatcgttgtgatatgagttgttt---cctaacatatcacagtgattttc 58
Query: 61 ctttata 67
|||||||
Sbjct: 59 ctttata 65
>36336_dme-mir-5:mirbase
Length = 69
Score = 65.9 bits (33), Expect = 3e-12
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 1 ctaaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttc 60
|||||||||||||||||||||||||| ||| || | | |||||||||||||||||||
Sbjct: 2 ctaaaaggaacgatcgttgtgatatgagttgttt---cctaacatatcacagtgattttc 58
Query: 61 ctttata 67
|||||||
Sbjct: 59 ctttata 65
>37120_dse-mir-5:mirbase
Length = 64
Score = 56.0 bits (28), Expect = 3e-09
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 2 taaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttcc 61
||||||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgagttgtt---cccgaacatatcacagtgattttcc 57
Query: 62 tttata 67
||||||
Sbjct: 58 tttata 63
>37198_dsi-mir-5:mirbase
Length = 63
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 acatatcacagtgattttcctttata 67
||||||||||||||||||||||||||
Sbjct: 37 acatatcacagtgattttcctttata 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 taaaaggaacgatcgttgtgatatg 26
|||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatg 25
