miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36761_dmo-mir-6-3:mirbase
Length = 78
Score = 85.7 bits (43), Expect = 4e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 4 gaagagaacgttcgctgttgatgtagtcgacctt-tgtactctttatatcacagtggctg 62
|||||||||||||||||||||||||||||| | | || ||||||||||||||||||||
Sbjct: 6 gaagagaacgttcgctgttgatgtagtcgaattcatttaatctttatatcacagtggctg 65
Query: 63 ttcttttttgt 73
|||||||||||
Sbjct: 66 ttcttttttgt 76
>36085_dan-mir-6-3:mirbase
Length = 76
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||||
Sbjct: 45 tttatatcacagtggctgttcttttttgt 73
>36163_der-mir-6-3:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77
>36248_dgr-mir-6-3:mirbase
Length = 74
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||||
Sbjct: 46 tttatatcacagtggctgttcttttttgt 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 aaggaagagaacgttcgctgttgatgtagt 30
||||||||||||| |||||| |||||||||
Sbjct: 1 aaggaagagaacgctcgctgctgatgtagt 30
>36251_dgr-mir-6-6:mirbase
Length = 74
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||||
Sbjct: 46 tttatatcacagtggctgttcttttttgt 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 aaggaagagaacgttcgctgttgatgtagt 30
||||||||||||| |||||| |||||||||
Sbjct: 1 aaggaagagaacgctcgctgctgatgtagt 30
>36341_dme-mir-6-3:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77
>36342_dme-mir-6-3:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77
>36833_dpe-mir-6-2:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77
>36910_dps-mir-6-3:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77
>37123_dse-mir-6-3:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77
>37201_dsi-mir-6-3:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttcttttttgt 77
>37412_dwi-mir-6-3:mirbase
Length = 76
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttttgt 73
|||||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttttgt 76
>37491_dya-mir-6-3:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttctttttt 71
|||||||||||||||||||||||||||
Sbjct: 49 tttatatcacagtggctgttctttttt 75
>36759_dmo-mir-6-1:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 tttatatcacagtggctgttcttttt 70
||||||||||||||||||||||||||
Sbjct: 38 tttatatcacagtggctgttcttttt 63
>36832_dpe-mir-6-1:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 actctttatatcacagtggctgttcttttt 70
||||| ||||||||||||||||||||||||
Sbjct: 37 actctatatatcacagtggctgttcttttt 66
>36908_dps-mir-6-1:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 actctttatatcacagtggctgttcttttt 70
||||| ||||||||||||||||||||||||
Sbjct: 42 actctatatatcacagtggctgttcttttt 71
>36083_dan-mir-6-1:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 41 tatatcacagtggctgttcttttt 64
>36084_dan-mir-6-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79
>36161_der-mir-6-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>36162_der-mir-6-2:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>36246_dgr-mir-6-1:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67
>36247_dgr-mir-6-2:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36249_dgr-mir-6-4:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67
>36250_dgr-mir-6-5:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36337_dme-mir-6-1:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>36338_dme-mir-6-1:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>36339_dme-mir-6-2:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>36340_dme-mir-6-2:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>36760_dmo-mir-6-2:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 53 tatatcacagtggctgttcttttt 76
>36834_dpe-mir-6-3:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79
>36909_dps-mir-6-2:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79
>37121_dse-mir-6-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>37122_dse-mir-6-2:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>37199_dsi-mir-6-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>37200_dsi-mir-6-2:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>37335_dvi-mir-6-1:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 44 tatatcacagtggctgttcttttt 67
>37411_dwi-mir-6-2:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 67 tatatcacagtggctgttcttttt 90
>37489_dya-mir-6-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>37490_dya-mir-6-2:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tatatcacagtggctgttcttttt 70
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>37336_dvi-mir-6-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 atatcacagtggctgttcttttt 70
|||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttcttttt 75
>37410_dwi-mir-6-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 atatcacagtggctgttcttttt 70
|||||||||||||||||||||||
Sbjct: 44 atatcacagtggctgttcttttt 66
