miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36266_dgr-mir-33:mirbase
Length = 92
Score = 125 bits (63), Expect = 6e-30
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 2 ggagctgttacggaggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaat 61
|||||||| ||| ||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct: 2 ggagctgtcacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaat 61
Query: 62 acaactgcagtgcaagctccgtgcagttcac 92
|||||||||||||||||||||||||||||||
Sbjct: 62 acaactgcagtgcaagctccgtgcagttcac 92
>36776_dmo-mir-33:mirbase
Length = 93
Score = 105 bits (53), Expect = 5e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 tggagctgttacggaggtgcattgtagtcgcattgtctgtctcaaatttgccc-gcggca 59
||||||||| |||||||||||||||||||||||||||||| || | | | | ||||||
Sbjct: 1 tggagctgtgacggaggtgcattgtagtcgcattgtctgtatcctttattctctgcggca 60
Query: 60 atacaactgcagtgcaagctccgtgcagttcac 92
|||||||||||||||||||||||||||||||||
Sbjct: 61 atacaactgcagtgcaagctccgtgcagttcac 93
>36100_dan-mir-33:mirbase
Length = 90
Score = 79.8 bits (40), Expect = 3e-16
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 2 ggagctgttacggaggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaat 61
|||| ||| ||| ||||||||||||||||||||||||||| || |||| | ||||||
Sbjct: 2 ggagatgtcacgcaggtgcattgtagtcgcattgtctgtcccac--ttgctccaggcaat 59
Query: 62 acaactgcagtgcaagctccgtgcagttcac 92
||||||||||||||||||| ||||| |||||
Sbjct: 60 acaactgcagtgcaagctctgtgcatttcac 90
>36178_der-mir-33:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 74
||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 72
Query: 75 aagctccgtgcagttcac 92
|||||| ||||| |||||
Sbjct: 73 aagctctgtgcatttcac 90
>36371_dme-mir-33:mirbase
Length = 99
Score = 69.9 bits (35), Expect = 3e-13
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 74
||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 24 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 81
Query: 75 aagctccgtgcagttcac 92
|||||| ||||| |||||
Sbjct: 82 aagctctgtgcatttcac 99
>36372_dme-mir-33:mirbase
Length = 99
Score = 69.9 bits (35), Expect = 3e-13
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 74
||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 24 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 81
Query: 75 aagctccgtgcagttcac 92
|||||| ||||| |||||
Sbjct: 82 aagctctgtgcatttcac 99
>37138_dse-mir-33:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 74
||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 72
Query: 75 aagctccgtgcagttcac 92
|||||| ||||| |||||
Sbjct: 73 aagctctgtgcatttcac 90
>37214_dsi-mir-33:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 74
||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 72
Query: 75 aagctccgtgcagttcac 92
|||||| ||||| |||||
Sbjct: 73 aagctctgtgcatttcac 90
>37506_dya-mir-33:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 74
||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 72
Query: 75 aagctccgtgcagttcac 92
|||||| ||||| |||||
Sbjct: 73 aagctctgtgcatttcac 90
>36849_dpe-mir-33:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 56 ggcaatacaactgcagtgcaagctccgtgcagttca 91
||||||||||||||||||||||||| ||||| ||||
Sbjct: 55 ggcaatacaactgcagtgcaagctctgtgcatttca 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtc 41
|||||||||||||||||||||||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgtc 41
>36925_dps-mir-33:mirbase
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtc 41
|||||||||||||||||||||||||||
Sbjct: 16 aggtgcattgtagtcgcattgtctgtc 42
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 ggcaatacaactgcagtgcaagctccgtgcagttca 91
||||||||||||||| ||||||||| ||||| ||||
Sbjct: 56 ggcaatacaactgcaatgcaagctctgtgcatttca 91
>37429_dwi-mir-33:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 13 aggtgcattgtagtcgcattgtctgt 38
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 ggcaatacaactgcagtgcaagctccgtg 84
|||||||||||||||||||||||| ||||
Sbjct: 73 ggcaatacaactgcagtgcaagcttcgtg 101
