miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36267_dgr-mir-34:mirbase
Length = 87
Score = 165 bits (83), Expect = 6e-42
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaattgacaaatcacagcc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaactgacaaatcacagcc 60
Query: 61 actatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||
Sbjct: 61 actatcttcactgccgccgcgacaagc 87
>36777_dmo-mir-34:mirbase
Length = 87
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaattgacaaatcacagcc 60
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccacttgaaaaatcacagcc 60
Query: 61 actatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||
Sbjct: 61 actatcttcactgccgccgcgacaagc 87
>36179_der-mir-34:mirbase
Length = 96
Score = 111 bits (56), Expect = 8e-26
Identities = 85/96 (88%), Gaps = 9/96 (9%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaat---------tgacaa 51
|||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaatcattgcttgtgacaa 60
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcacagccactatcttcactgccgccgcgacaagc 96
>36373_dme-mir-34:mirbase
Length = 99
Score = 111 bits (56), Expect = 8e-26
Identities = 85/96 (88%), Gaps = 9/96 (9%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ttgacaa 51
|||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 4 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 63
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||||||||||
Sbjct: 64 ttcacagccactatcttcactgccgccgcgacaagc 99
>36374_dme-mir-34:mirbase
Length = 99
Score = 111 bits (56), Expect = 8e-26
Identities = 85/96 (88%), Gaps = 9/96 (9%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ttgacaa 51
|||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 4 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 63
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||||||||||
Sbjct: 64 ttcacagccactatcttcactgccgccgcgacaagc 99
>37139_dse-mir-34:mirbase
Length = 96
Score = 111 bits (56), Expect = 8e-26
Identities = 85/96 (88%), Gaps = 9/96 (9%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ttgacaa 51
|||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
>37215_dsi-mir-34:mirbase
Length = 96
Score = 111 bits (56), Expect = 8e-26
Identities = 85/96 (88%), Gaps = 9/96 (9%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ttgacaa 51
|||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
>37507_dya-mir-34:mirbase
Length = 96
Score = 111 bits (56), Expect = 8e-26
Identities = 85/96 (88%), Gaps = 9/96 (9%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ttgacaa 51
|||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
Query: 52 atcacagccactatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
>36850_dpe-mir-34:mirbase
Length = 97
Score = 99.6 bits (50), Expect = 3e-22
Identities = 84/97 (86%), Gaps = 10/97 (10%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa----------ttgaca 50
|||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttgacc 60
Query: 51 aatcacagccactatcttcactgccgccgcgacaagc 87
| |||||||||||||||||||||||||||||||||||
Sbjct: 61 attcacagccactatcttcactgccgccgcgacaagc 97
>36926_dps-mir-34:mirbase
Length = 100
Score = 99.6 bits (50), Expect = 3e-22
Identities = 84/97 (86%), Gaps = 10/97 (10%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaa----------ttgaca 50
|||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 4 tggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttgacc 63
Query: 51 aatcacagccactatcttcactgccgccgcgacaagc 87
| |||||||||||||||||||||||||||||||||||
Sbjct: 64 attcacagccactatcttcactgccgccgcgacaagc 100
>37430_dwi-mir-34:mirbase
Length = 100
Score = 83.8 bits (42), Expect = 2e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgtggccaatt 46
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgtagccaatt 46
>36101_dan-mir-34:mirbase
Length = 97
Score = 75.8 bits (38), Expect = 5e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tggctatgcgctttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctatgcgctttggcagtgtggttagctggttgtgt 38
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 53 tcacagccactatcttcactgccgccgcgacaagc 87
|||||||||||||||||||||||||||||||||||
Sbjct: 63 tcacagccactatcttcactgccgccgcgacaagc 97
>35283_aga-mir-34:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 cgctttggcagtgtggttagctggttgtgtgg 40
|||| |||||||||||||||||||||||||||
Sbjct: 12 cgctctggcagtgtggttagctggttgtgtgg 43
>35184_aae-mir-34:mirbase
Length = 129
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 cgctttggcagtgtggttagctggttgtgt 38
|||| |||||||||||||||||||||||||
Sbjct: 11 cgctatggcagtgtggttagctggttgtgt 40
>35531_bmo-mir-34:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||
Sbjct: 20 ttggcagtgtggttagctggttgtgt 45
>37576_ngi-mir-34:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||
Sbjct: 7 ttggcagtgtggttagctggttgtgt 32
>37608_nlo-mir-34:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||
Sbjct: 7 ttggcagtgtggttagctggttgtgt 32
>37645_nvi-mir-34:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgt 38
||||||||||||||||||||||||||
Sbjct: 20 ttggcagtgtggttagctggttgtgt 45
>35005_dpu-mir-34:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtg 37
|||||||||||||||||||||||||
Sbjct: 21 ttggcagtgtggttagctggttgtg 45
>35358_ame-mir-34:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ttggcagtgtggttagctggttgtgtggc 41
|||||||||| ||||||||||||||||||
Sbjct: 20 ttggcagtgttgttagctggttgtgtggc 48
>37723_tca-mir-34:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgtgt 38
|||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35
>37724_tca-mir-34:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgtgt 38
|||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35
>38739_cte-mir-34:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgtg 37
||||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgtg 45
>34870_sko-mir-34:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgt 36
|||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgt 44
>38100_bma-mir-34:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgt 36
|||||||||||||||||||||||
Sbjct: 23 tggcagtgtggttagctggttgt 45
>38488_crm-mir-34:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ggcagtgtggttagctggttg 35
|||||||||||||||||||||
Sbjct: 16 ggcagtgtggttagctggttg 36
>35054_api-mir-34:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggttgtgt 38
|||||||||| ||||||||||||||
Sbjct: 1 tggcagtgtgattagctggttgtgt 25
>38127_cbr-mir-34:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ggcagtgtggttagctggttg 35
|||||||||||||||||||||
Sbjct: 19 ggcagtgtggttagctggttg 39
>38268_cel-mir-34:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ggcagtgtggttagctggttg 35
|||||||||||||||||||||
Sbjct: 17 ggcagtgtggttagctggttg 37
>38858_lgi-mir-34:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 tggcagtgtggttagctggt 33
||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggt 41
