miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37442_dwi-mir-210:mirbase
Length = 86
Score = 151 bits (76), Expect = 9e-38
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 ggtacttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 ggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
Query: 61 acagcggctattgtaagagaccag 84
||||||||||||||||||| ||||
Sbjct: 63 acagcggctattgtaagaggccag 86
>37517_dya-mir-210:mirbase
Length = 86
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 ggtacttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 ggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
Query: 61 acagcggctattgtaagag 79
|||||||||||||||||||
Sbjct: 63 acagcggctattgtaagag 81
>36787_dmo-mir-210:mirbase
Length = 86
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 5 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 66
Query: 65 cggctattgtaaga 78
||||||||||||||
Sbjct: 67 cggctattgtaaga 80
>36111_dan-mir-210:mirbase
Length = 86
Score = 141 bits (71), Expect = 9e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 5 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
Query: 65 cggctattgtaagag 79
|||||||||||||||
Sbjct: 67 cggctattgtaagag 81
>36189_der-mir-210:mirbase
Length = 86
Score = 141 bits (71), Expect = 9e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 5 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
Query: 65 cggctattgtaagag 79
|||||||||||||||
Sbjct: 67 cggctattgtaagag 81
>36399_dme-mir-210:mirbase
Length = 100
Score = 141 bits (71), Expect = 9e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 5 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8 cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 67
Query: 65 cggctattgtaagag 79
|||||||||||||||
Sbjct: 68 cggctattgtaagag 82
>36400_dme-mir-210:mirbase
Length = 100
Score = 141 bits (71), Expect = 9e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 5 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8 cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 67
Query: 65 cggctattgtaagag 79
|||||||||||||||
Sbjct: 68 cggctattgtaagag 82
>36863_dpe-mir-210:mirbase
Length = 84
Score = 141 bits (71), Expect = 9e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 1 ggtacttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 60
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1 ggtacttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtg 60
Query: 61 acagcggctattgtaagag 79
|||||||||||||||||||
Sbjct: 61 acagcggctattgtaagag 79
>36940_dps-mir-210a:mirbase
Length = 94
Score = 141 bits (71), Expect = 9e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 1 ggtacttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 60
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1 ggtacttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtg 60
Query: 61 acagcggctattgtaagag 79
|||||||||||||||||||
Sbjct: 61 acagcggctattgtaagag 79
>36941_dps-mir-210b:mirbase
Length = 109
Score = 141 bits (71), Expect = 9e-35
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 1 ggtacttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 60
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 94 ggtacttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtg 35
Query: 61 acagcggctattgtaagag 79
|||||||||||||||||||
Sbjct: 34 acagcggctattgtaagag 16
>37149_dse-mir-210:mirbase
Length = 86
Score = 141 bits (71), Expect = 9e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 5 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
Query: 65 cggctattgtaagag 79
|||||||||||||||
Sbjct: 67 cggctattgtaagag 81
>37227_dsi-mir-210:mirbase
Length = 86
Score = 141 bits (71), Expect = 9e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 5 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
Query: 65 cggctattgtaagag 79
|||||||||||||||
Sbjct: 67 cggctattgtaagag 81
>36278_dgr-mir-210:mirbase
Length = 86
Score = 125 bits (63), Expect = 5e-30
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 5 cttattgcagctgctggccactgcacaagattagactcaa--gactcttgtgcgtgtgac 62
||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 5 cttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgac 64
Query: 63 agcggctattgtaagagaccag 84
||||||||||||||||||||||
Sbjct: 65 agcggctattgtaagagaccag 86
>35374_ame-mir-210:mirbase
Length = 85
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 10 tgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcggct 69
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
Query: 70 at 71
||
Sbjct: 71 at 72
>37582_ngi-mir-210:mirbase
Length = 85
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 10 tgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcggct 69
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
Query: 70 at 71
||
Sbjct: 71 at 72
>37655_nvi-mir-210:mirbase
Length = 85
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 10 tgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcggct 69
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
Query: 70 at 71
||
Sbjct: 71 at 72
>35199_aae-mir-210:mirbase
Length = 68
Score = 83.8 bits (42), Expect = 2e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 8 attgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcgg 67
||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| |||
Sbjct: 4 attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 62
Query: 68 ctattg 73
||||||
Sbjct: 63 ctattg 68
>36028_cqu-mir-210:mirbase
Length = 68
Score = 83.8 bits (42), Expect = 2e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 8 attgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcgg 67
||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| |||
Sbjct: 4 attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 62
Query: 68 ctattg 73
||||||
Sbjct: 63 ctattg 68
>35295_aga-mir-210:mirbase
Length = 80
Score = 73.8 bits (37), Expect = 2e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 8 attgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcgg 67
||||||||||||| |||||||||||||||||| | ||||||||||||||||||| |||
Sbjct: 8 attgcagctgctgaccactgcacaagattagaat-gcgactcttgtgcgtgtgacaacgg 66
Query: 68 ctatt 72
|||||
Sbjct: 67 ctatt 71
>35543_bmo-mir-210:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/68 (89%), Gaps = 7/68 (10%)
Strand = Plus / Plus
Query: 11 gcagctgctggccactgcacaagattagactcaag-----actcttgtgcgtgtgacagc 65
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 14 gcagctgctggccactgcacaagattag--tcaagtttatactcttgtgcgtgtgacagc 71
Query: 66 ggctattg 73
||||||||
Sbjct: 72 ggctattg 79
>37564_lmi-mir-210:mirbase
Length = 62
Score = 61.9 bits (31), Expect = 7e-11
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 13 agctgctggccactgcacaagattag--actcaa-gactcttgtgcgtgtgacagcggct 69
||||||||| |||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
Query: 70 at 71
||
Sbjct: 61 at 62
>37753_tca-mir-210:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 3e-10
Identities = 59/68 (86%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 10 tgcagctgctggccactgcacaagattagac---tcaagactcttgtgcgtgtgacagcg 66
|||||||||||| | ||||||||||||||| | | |||||||||||||||||||||
Sbjct: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
Query: 67 gctattgt 74
||||||||
Sbjct: 66 gctattgt 73
>37754_tca-mir-210:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 3e-10
Identities = 59/68 (86%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 10 tgcagctgctggccactgcacaagattagac---tcaagactcttgtgcgtgtgacagcg 66
|||||||||||| | ||||||||||||||| | | |||||||||||||||||||||
Sbjct: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
Query: 67 gctattgt 74
||||||||
Sbjct: 66 gctattgt 73
>25831_xtr-mir-210:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggcta 70
||||||||||||||||||||
Sbjct: 57 tgtgcgtgtgacagcggcta 76
>27426_mdo-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggcta 70
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
>34366_dre-mir-210:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggcta 70
||||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggcta 68
>34634_fru-mir-210:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggcta 70
||||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggcta 75
>34782_tni-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggcta 70
||||||||||||||||||||
Sbjct: 48 tgtgcgtgtgacagcggcta 67
>24695_bfl-mir-210:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 62 tgtgcgtgtgacagcggct 80
>25526_pma-mir-210:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
>26770_cfa-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>27806_mml-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>28528_hsa-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>30287_ptr-mir-210:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>31937_mmu-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>32801_rno-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>33068_rno-mir-3574:mirbase
Length = 118
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggct 32
>33287_bta-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>34038_ssc-mir-210:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 tgtgcgtgtgacagcggct 69
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
