miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36789_dmo-mir-263a:mirbase
          Length = 89

 Score =  168 bits (85), Expect = 4e-43
 Identities = 88/89 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacggggtttttataacacgcccgtgat 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1  atctcggcacagttaatggcactggaagaattcacggggtttttctaacacgcccgtgat 60

                                       
Query: 61 ctcttagtggcatctatggtgcgggatat 89
          |||||||||||||||||||||||||||||
Sbjct: 61 ctcttagtggcatctatggtgcgggatat 89




>36280_dgr-mir-263a:mirbase
          Length = 89

 Score =  161 bits (81), Expect = 1e-40
 Identities = 87/89 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacggggtttttataacacgcccgtgat 60
          ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1  atctcggcacagttaatggcactggaagaattcacggggttattttaacacgcccgtgat 60

                                       
Query: 61 ctcttagtggcatctatggtgcgggatat 89
          |||||||||||||||||||||||||||||
Sbjct: 61 ctcttagtggcatctatggtgcgggatat 89




>37444_dwi-mir-263a:mirbase
          Length = 91

 Score =  147 bits (74), Expect = 2e-36
 Identities = 86/89 (96%), Gaps = 2/89 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacggggttttta--taacacgcccgtg 58
          |||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||
Sbjct: 1  atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60

                                       
Query: 59 atctcttagtggcatctatggtgcgggat 87
          |||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcgggat 89




>36865_dpe-mir-263a:mirbase
          Length = 89

 Score =  109 bits (55), Expect = 3e-25
 Identities = 78/83 (93%), Gaps = 2/83 (2%)
 Strand = Plus / Plus

                                                                      
Query: 5  cggcacagttaatggcactggaagaattcacggggttttt-ataacacgcccgtgatctc 63
          |||||||||||||||||||||||||||||||||||||||| |  |||  |||||||||||
Sbjct: 6  cggcacagttaatggcactggaagaattcacggggtttttcaataca-acccgtgatctc 64

                                 
Query: 64 ttagtggcatctatggtgcggga 86
          |||||||||||||||||||||||
Sbjct: 65 ttagtggcatctatggtgcggga 87




>36944_dps-mir-263a:mirbase
          Length = 92

 Score =  109 bits (55), Expect = 3e-25
 Identities = 78/83 (93%), Gaps = 2/83 (2%)
 Strand = Plus / Plus

                                                                      
Query: 5  cggcacagttaatggcactggaagaattcacggggttttt-ataacacgcccgtgatctc 63
          |||||||||||||||||||||||||||||||||||||||| |  |||  |||||||||||
Sbjct: 7  cggcacagttaatggcactggaagaattcacggggtttttcaataca-acccgtgatctc 65

                                 
Query: 64 ttagtggcatctatggtgcggga 86
          |||||||||||||||||||||||
Sbjct: 66 ttagtggcatctatggtgcggga 88




>37105_dps-mir-3983:mirbase
          Length = 88

 Score =  109 bits (55), Expect = 3e-25
 Identities = 78/83 (93%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                      
Query: 5  cggcacagttaatggcactggaagaattcacggggttttt-ataacacgcccgtgatctc 63
          |||||||||||||||||||||||||||||||||||||||| |  |||  |||||||||||
Sbjct: 83 cggcacagttaatggcactggaagaattcacggggtttttcaataca-acccgtgatctc 25

                                 
Query: 64 ttagtggcatctatggtgcggga 86
          |||||||||||||||||||||||
Sbjct: 24 ttagtggcatctatggtgcggga 2




>36113_dan-mir-263a:mirbase
          Length = 90

 Score =  105 bits (53), Expect = 5e-24
 Identities = 83/89 (93%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacggggt-ttttata-acacgcccgtg 58
          ||||||||||||||||||||||||||||||||||||||||  ||| || |||  ||||||
Sbjct: 1  atctcggcacagttaatggcactggaagaattcacggggtaatttctataca-acccgtg 59

                                       
Query: 59 atctcttagtggcatctatggtgcgggat 87
          |||||||||||||||||||||||||||||
Sbjct: 60 atctcttagtggcatctatggtgcgggat 88




>36405_dme-mir-263a:mirbase
          Length = 94

 Score =  105 bits (53), Expect = 5e-24
 Identities = 79/86 (91%), Gaps = 5/86 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacgggg---tttttataacacgcccgt 57
          |||||||||||||||||||||||||||||||||||||||   ||||||||  |  |||||
Sbjct: 4  atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaa--cccgt 61

                                    
Query: 58 gatctcttagtggcatctatggtgcg 83
          ||||||||||||||||||||||||||
Sbjct: 62 gatctcttagtggcatctatggtgcg 87




>36406_dme-mir-263a:mirbase
          Length = 94

 Score =  105 bits (53), Expect = 5e-24
 Identities = 79/86 (91%), Gaps = 5/86 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacgggg---tttttataacacgcccgt 57
          |||||||||||||||||||||||||||||||||||||||   ||||||||  |  |||||
Sbjct: 4  atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaa--cccgt 61

                                    
Query: 58 gatctcttagtggcatctatggtgcg 83
          ||||||||||||||||||||||||||
Sbjct: 62 gatctcttagtggcatctatggtgcg 87




>37230_dsi-mir-263a:mirbase
          Length = 90

 Score =  105 bits (53), Expect = 5e-24
 Identities = 79/86 (91%), Gaps = 5/86 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacgggg---tttttataacacgcccgt 57
          |||||||||||||||||||||||||||||||||||||||   ||||||||  |  |||||
Sbjct: 2  atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaa--cccgt 59

                                    
Query: 58 gatctcttagtggcatctatggtgcg 83
          ||||||||||||||||||||||||||
Sbjct: 60 gatctcttagtggcatctatggtgcg 85




>37519_dya-mir-263a:mirbase
          Length = 90

 Score =  105 bits (53), Expect = 5e-24
 Identities = 79/86 (91%), Gaps = 5/86 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacgggg---tttttataacacgcccgt 57
          |||||||||||||||||||||||||||||||||||||||   ||||||||  |  |||||
Sbjct: 2  atctcggcacagttaatggcactggaagaattcacggggtactttttatacaa--cccgt 59

                                    
Query: 58 gatctcttagtggcatctatggtgcg 83
          ||||||||||||||||||||||||||
Sbjct: 60 gatctcttagtggcatctatggtgcg 85




>36191_der-mir-263a:mirbase
          Length = 90

 Score =  103 bits (52), Expect = 2e-23
 Identities = 77/84 (91%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacggggtttttataacac-gcccgtga 59
          ||||||||||||||||||||||||||||||||||||||||  || | | ||  |||||||
Sbjct: 2  atctcggcacagttaatggcactggaagaattcacggggtacttttgatacaacccgtga 61

                                  
Query: 60 tctcttagtggcatctatggtgcg 83
          ||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85




>37151_dse-mir-263a:mirbase
          Length = 90

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 78/86 (90%), Gaps = 5/86 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcggcacagttaatggcactggaagaattcacgggg---tttttataacacgcccgt 57
          |||||| ||||||||||||||||||||||||||||||||   ||||||||  |  |||||
Sbjct: 2  atctcgacacagttaatggcactggaagaattcacggggtaatttttatacaa--cccgt 59

                                    
Query: 58 gatctcttagtggcatctatggtgcg 83
          ||||||||||||||||||||||||||
Sbjct: 60 gatctcttagtggcatctatggtgcg 85




>35297_aga-mir-263:mirbase
          Length = 86

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 55/61 (90%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 taatggcactggaagaattcacggggtttttat-aacacgcccgtgatctcttagtggca 72
          ||||||||||||||||||||||||| ||||| | ||||  |||||| |||||||||||||
Sbjct: 13 taatggcactggaagaattcacgggatttttttcaacattcccgtgttctcttagtggca 72

           
Query: 73 t 73
          |
Sbjct: 73 t 73




>37761_tca-mir-263a:mirbase
          Length = 91

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 15 aatggcactggaagaattcacggggtt 41
          |||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggtt 44




>37762_tca-mir-263a:mirbase
          Length = 91

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 15 aatggcactggaagaattcacggggtt 41
          |||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggtt 44




>34978_isc-mir-263a:mirbase
          Length = 100

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 15 aatggcactggaagaattcacggggt 40
          ||||||||||||||||||||||||||
Sbjct: 21 aatggcactggaagaattcacggggt 46




>35202_aae-mir-263a:mirbase
          Length = 97

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 taatggcactggaagaattcacggg 38
          |||||||||||||||||||||||||
Sbjct: 13 taatggcactggaagaattcacggg 37




>35377_ame-mir-263:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 aatggcactggaagaattcacgggg 39
          |||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40




>36030_cqu-mir-263:mirbase
          Length = 76

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 taatggcactggaagaattcacggg 38
          |||||||||||||||||||||||||
Sbjct: 8  taatggcactggaagaattcacggg 32




>35019_dpu-mir-263a:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 aatggcactggaagaattcacggg 38
          ||||||||||||||||||||||||
Sbjct: 20 aatggcactggaagaattcacggg 43




>35545_bmo-mir-263a:mirbase
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 aatggcactggaagaattcacggg 38
          ||||||||||||||||||||||||
Sbjct: 19 aatggcactggaagaattcacggg 42




>35073_api-mir-263a:mirbase
          Length = 66

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 aatggcactggaagaattcacggggt 40
          |||||||||| |||||||||||||||
Sbjct: 1  aatggcactgaaagaattcacggggt 26




>38872_lgi-mir-183:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 9  acagttaatggcactggaagaattcacgg 37
          ||||| ||||||||||| |||||||||||
Sbjct: 15 acagtgaatggcactggtagaattcacgg 43