miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36281_dgr-mir-263b:mirbase
Length = 75
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 3 catcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgc 62
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 6 catcttggcactgggagaattcacagttggttatataatattctgtggttctgcgggtgc 65
Query: 63 caaaatgta 71
|||| ||||
Sbjct: 66 caaactgta 74
>36114_dan-mir-263b:mirbase
Length = 89
Score = 83.8 bits (42), Expect = 1e-17
Identities = 60/65 (92%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 4 atcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcc 63
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct: 13 atcttggcactgggagaattcacagttgattttat--tattctgtggttctgcgggtgcc 70
Query: 64 aaaat 68
|||||
Sbjct: 71 aaaat 75
>36192_der-mir-263b:mirbase
Length = 89
Score = 81.8 bits (41), Expect = 6e-17
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64
||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgattttat--tattctgtggttctgcgggtgcca 72
Query: 65 aaat 68
||||
Sbjct: 73 aaat 76
>36945_dps-mir-263b:mirbase
Length = 91
Score = 79.8 bits (40), Expect = 2e-16
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64
||||||||||||||||||||||||| | || | |||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74
Query: 65 aaat 68
||||
Sbjct: 75 aaat 78
>37520_dya-mir-263b-1:mirbase
Length = 88
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/64 (90%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64
||||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 14 tcttggcactgggagaattcacagttgactttat--tattctgtggttctgcgggtgcca 71
Query: 65 aaat 68
||||
Sbjct: 72 aaat 75
>37521_dya-mir-263b-2:mirbase
Length = 88
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/64 (90%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64
||||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 14 tcttggcactgggagaattcacagttgactttat--tattctgtggttctgcgggtgcca 71
Query: 65 aaat 68
||||
Sbjct: 72 aaat 75
>36407_dme-mir-263b:mirbase
Length = 90
Score = 71.9 bits (36), Expect = 6e-14
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64
||||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgactttat--tattctgtggttctgcgggtgcca 72
Query: 65 aaa 67
|||
Sbjct: 73 aaa 75
>36408_dme-mir-263b:mirbase
Length = 90
Score = 71.9 bits (36), Expect = 6e-14
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64
||||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgactttat--tattctgtggttctgcgggtgcca 72
Query: 65 aaa 67
|||
Sbjct: 73 aaa 75
>37152_dse-mir-263b:mirbase
Length = 90
Score = 71.9 bits (36), Expect = 6e-14
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64
||||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgacttgat--tattctgtggttctgcgggtgcca 72
Query: 65 aaa 67
|||
Sbjct: 73 aaa 75
>37231_dsi-mir-263b:mirbase
Length = 90
Score = 71.9 bits (36), Expect = 6e-14
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64
||||||||||||||||||||||||| || | || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttgacttgat--tattctgtggttctgcgggtgcca 72
Query: 65 aaa 67
|||
Sbjct: 73 aaa 75
>37445_dwi-mir-263b:mirbase
Length = 70
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/69 (89%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 4 atcttggcactgggagaattcacagtcgattacata----atattctgtggttctgcggg 59
|||||||||||||||||||||||||| |||| | || ||||||||||||||||||||
Sbjct: 1 atcttggcactgggagaattcacagttgatt-cttattcgatattctgtggttctgcggg 59
Query: 60 tgccaaaat 68
|||||||||
Sbjct: 60 tgccaaaat 68
>36866_dpe-mir-263b:mirbase
Length = 92
Score = 63.9 bits (32), Expect = 1e-11
Identities = 55/60 (91%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacag-tcgattacataatattctgtggttctgcgggtgcc 63
|||||||||||||||||||||||| | | || ||| ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttggttttcat-atattctgtggttctgcgggtgcc 73
>35298_aga-mir-263b:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 cttggcactgggagaattcacagt 29
||||||||||||||||||||||||
Sbjct: 16 cttggcactgggagaattcacagt 39
>35203_aae-mir-263b:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cttggcactgggagaattcacag 28
|||||||||||||||||||||||
Sbjct: 15 cttggcactgggagaattcacag 37
>35546_bmo-mir-263b:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cttggcactgggagaattcacag 28
|||||||||||||||||||||||
Sbjct: 15 cttggcactgggagaattcacag 37
>35378_ame-mir-263b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacag 28
|||||||||||| |||||||||||
Sbjct: 15 tcttggcactggaagaattcacag 38
>37585_ngi-mir-263b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacag 28
|||||||||||| |||||||||||
Sbjct: 14 tcttggcactggaagaattcacag 37
>37616_nlo-mir-263b:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacag 28
|||||||||||| |||||||||||
Sbjct: 14 tcttggcactggaagaattcacag 37
>37658_nvi-mir-263b:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tcttggcactgggagaattcacag 28
|||||||||||| |||||||||||
Sbjct: 9 tcttggcactggaagaattcacag 32
>35020_dpu-mir-263b:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6 cttggcactgggagaattcacag 28
||||||||||| |||||||||||
Sbjct: 7 cttggcactggaagaattcacag 29
>35074_api-mir-263b:mirbase
Length = 62
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6 cttggcactgggagaattcacag 28
||||||||||| |||||||||||
Sbjct: 1 cttggcactggaagaattcacag 23
>37764_tca-mir-263b:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6 cttggcactgggagaattcacag 28
||||||||||| |||||||||||
Sbjct: 10 cttggcactggaagaattcacag 32
>37763_tca-mir-263b:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6 cttggcactgggagaattcacag 28
||||||||||| |||||||||||
Sbjct: 10 cttggcactggaagaattcacag 32
