miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36790_dmo-mir-274:mirbase
Length = 87
Score = 119 bits (60), Expect = 4e-28
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 12 tttcggtttgtgaccgacactaacgggtagttggggcacctcgaatacgctgttt--tac 69
||||||||||||||||||||||||||||||||| |||| |||| || |||||||| |||
Sbjct: 1 tttcggtttgtgaccgacactaacgggtagttgaggcatctcgtattcgctgttttatac 60
Query: 70 tcgtttttgcgatcacaaattctgaaa 96
|||||||||||||||||||||||||||
Sbjct: 61 tcgtttttgcgatcacaaattctgaaa 87
>37446_dwi-mir-274:mirbase
Length = 105
Score = 75.8 bits (38), Expect = 6e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 64 ttttactcgtttttgcgatcacaaattctgaaattgca 101
||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttttactcgtttttgcgatcacaaattctgaaattgca 105
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 5 gttgcagtttcggtttgtgaccgacactaacgggtagt 42
||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gttgcagtttcattttgtgaccgacactaacgggtagt 38
>36282_dgr-mir-274:mirbase
Length = 82
Score = 69.9 bits (35), Expect = 3e-13
Identities = 73/82 (89%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 14 tcggtttgtgaccgacactaacgggtagtt--ggggca-cctcgaatac-gctgttttac 69
|||||||||||||||||||||||||||||| ||||| ||||| || | |||| ||||
Sbjct: 1 tcggtttgtgaccgacactaacgggtagttaaagggcatcctcgcattctgctggcttac 60
Query: 70 tcgtttttgcgatcacaaattc 91
||||||||||||||||||||||
Sbjct: 61 tcgtttttgcgatcacaaattc 82
>36115_dan-mir-274:mirbase
Length = 96
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 4 tgttgcagtttcggtttgtgaccgacactaacgggta 40
||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgttgcagtttcgttttgtgaccgacactaacgggta 37
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 66 ttactcgtttttgcgatcacaaattctgaaattgca 101
|||||||||||||||||||||||| |||||||||||
Sbjct: 57 ttactcgtttttgcgatcacaaatcctgaaattgca 92
>36193_der-mir-274:mirbase
Length = 97
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 4 tgttgcagtttcggtttgtgaccgacactaacgggta 40
||||||||||||| |||||||||||||||||||||||
Sbjct: 3 tgttgcagtttcgttttgtgaccgacactaacgggta 39
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 66 ttactcgtttttgcgatcacaaattctgaaattgca 101
|||||||||||||||||||||||| ||||||||||
Sbjct: 58 ttactcgtttttgcgatcacaaatcatgaaattgca 93
>36409_dme-mir-274:mirbase
Length = 100
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 4 tgttgcagtttcggtttgtgaccgacactaacgggta 40
||||||||||||| |||||||||||||||||||||||
Sbjct: 6 tgttgcagtttcgttttgtgaccgacactaacgggta 42
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 66 ttactcgtttttgcgatcacaaattctgaaattgca 101
||||||||||||||||||||||||| ||||||||||
Sbjct: 61 ttactcgtttttgcgatcacaaattatgaaattgca 96
>36410_dme-mir-274:mirbase
Length = 100
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 4 tgttgcagtttcggtttgtgaccgacactaacgggta 40
||||||||||||| |||||||||||||||||||||||
Sbjct: 6 tgttgcagtttcgttttgtgaccgacactaacgggta 42
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 66 ttactcgtttttgcgatcacaaattctgaaattgca 101
||||||||||||||||||||||||| ||||||||||
Sbjct: 61 ttactcgtttttgcgatcacaaattatgaaattgca 96
>37153_dse-mir-274:mirbase
Length = 97
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 4 tgttgcagtttcggtttgtgaccgacactaacgggta 40
||||||||||||| |||||||||||||||||||||||
Sbjct: 3 tgttgcagtttcgttttgtgaccgacactaacgggta 39
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 66 ttactcgtttttgcgatcacaaattctgaaattgca 101
|||||||||||||||||||||||| ||||||||||
Sbjct: 58 ttactcgtttttgcgatcacaaatcatgaaattgca 93
>37522_dya-mir-274:mirbase
Length = 97
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 4 tgttgcagtttcggtttgtgaccgacactaacgggta 40
||||||||||||| |||||||||||||||||||||||
Sbjct: 3 tgttgcagtttcgttttgtgaccgacactaacgggta 39
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 66 ttactcgtttttgcgatcacaaattctgaaattgca 101
|||||||||||||||||||||||| ||||||||||
Sbjct: 58 ttactcgtttttgcgatcacaaatcatgaaattgca 93
>36867_dpe-mir-274:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 7 tgcagtttcggtttgtgaccgacactaacgggta 40
||||||||| |||||||||||||||||||||||
Sbjct: 6 tgcagtttcattttgtgaccgacactaacgggta 39
Score = 46.1 bits (23), Expect = 5e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 67 tactcgtttttgcgatcacaaattctgaaattgca 101
||||||||||||||||||| ||| |||||||||||
Sbjct: 57 tactcgtttttgcgatcac-aatactgaaattgca 90
>36946_dps-mir-274:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 7 tgcagtttcggtttgtgaccgacactaacgggta 40
||||||||| |||||||||||||||||||||||
Sbjct: 9 tgcagtttcattttgtgaccgacactaacgggta 42
Score = 46.1 bits (23), Expect = 5e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 67 tactcgtttttgcgatcacaaattctgaaattgca 101
||||||||||||||||||| ||| |||||||||||
Sbjct: 60 tactcgtttttgcgatcac-aatactgaaattgca 93
