miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36287_dgr-mir-278:mirbase
Length = 92
Score = 153 bits (77), Expect = 3e-38
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
|||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct: 3 atggtacggtgcgaccggatgacggttcacaacgaccgtgcttatttttaactggtcggt 62
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 63 gggactttcgtccgtttgtaacgccattt 91
>36198_der-mir-278:mirbase
Length = 91
Score = 131 bits (66), Expect = 9e-32
Identities = 84/89 (94%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
|||||||||||||||||||||||||||||||||||||||| | |||| ||| |||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtg--tcctttaaacgggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccattt 90
>37158_dse-mir-278:mirbase
Length = 91
Score = 131 bits (66), Expect = 9e-32
Identities = 84/89 (94%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
|||||||||||||||||||||||||||||||||||||||| | |||| ||| |||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtg--tcctttaaacgggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccattt 90
>37236_dsi-mir-278:mirbase
Length = 91
Score = 131 bits (66), Expect = 9e-32
Identities = 84/89 (94%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
|||||||||||||||||||||||||||||||||||||||| | |||| ||| |||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtg--tcctttaaacgggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccattt 90
>37527_dya-mir-278:mirbase
Length = 91
Score = 131 bits (66), Expect = 9e-32
Identities = 84/89 (94%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
|||||||||||||||||||||||||||||||||||||||| | |||| ||| |||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtg--tcctttaaacgggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccattt 90
>36795_dmo-mir-278:mirbase
Length = 92
Score = 127 bits (64), Expect = 1e-30
Identities = 86/92 (93%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 ttatggtacggtgcgaccggatgatggttcacaacgaccgtgca-tacttttaactggtc 59
||||||||||||||||||||||||||||||||||||||||| || | ||| ||| ||||
Sbjct: 1 ttatggtacggtgcgaccggatgatggttcacaacgaccgtacagttttttcaacgggtc 60
Query: 60 ggtgggactttcgtccgtttgtaacgccattt 91
||||||||||||||||||||||||||||||||
Sbjct: 61 ggtgggactttcgtccgtttgtaacgccattt 92
>36120_dan-mir-278:mirbase
Length = 91
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
|||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtg--tccttcgaacgggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccattt 90
>36419_dme-mir-278:mirbase
Length = 98
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
|||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtg--tcatttaaacgggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccattt 90
>36420_dme-mir-278:mirbase
Length = 98
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
|||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||
Sbjct: 4 atggtacggtgcgaccggatgatggttcacaacgaccgtg--tcatttaaacgggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccattt 90
>36872_dpe-mir-278:mirbase
Length = 91
Score = 115 bits (58), Expect = 6e-27
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
||||||||||||||||||| |||||||||||||||||||| | || |||||||||||
Sbjct: 4 atggtacggtgcgaccggacgatggttcacaacgaccgtgtctc--ttaaactggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccattt 90
>36952_dps-mir-278:mirbase
Length = 98
Score = 115 bits (58), Expect = 6e-27
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
||||||||||||||||||| |||||||||||||||||||| | || |||||||||||
Sbjct: 4 atggtacggtgcgaccggacgatggttcacaacgaccgtgtctc--ttaaactggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccattt 90
>37451_dwi-mir-278:mirbase
Length = 91
Score = 115 bits (58), Expect = 6e-27
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 3 atggtacggtgcgaccggatgatggttcacaacgaccgtgcatacttttaactggtcggt 62
|||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||
Sbjct: 4 atggtacggtgcgaccggatgacggttcacaacgaccgtgtcaatttt--actggtcggt 61
Query: 63 gggactttcgtccgtttgtaacgccattt 91
|||||||||||||||||||||||||||||
Sbjct: 62 gggactttcgtccgtttgtaacgccattt 90
>35208_aae-mir-278:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 tggtcggtgggactttcgtccgtttgtaac 84
||||||||||||||||||||||||||||||
Sbjct: 48 tggtcggtgggactttcgtccgtttgtaac 77
>36036_cqu-mir-278:mirbase
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 56 ggtcggtgggactttcgtccgtttgtaac 84
|||||||||||||||||||||||||||||
Sbjct: 65 ggtcggtgggactttcgtccgtttgtaac 93
>35303_aga-mir-278:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 56 ggtcggtgggactttcgtccgtttgtaa 83
||||||||||||||||||||||||||||
Sbjct: 52 ggtcggtgggactttcgtccgtttgtaa 79
>35382_ame-mir-278:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ggtcggtgggactttcgtccgtttg 80
|||||||||||||||||||||||||
Sbjct: 55 ggtcggtgggactttcgtccgtttg 79
>35023_dpu-mir-278:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 ggtcggtgggactttcgtccgt 77
||||||||||||||||||||||
Sbjct: 59 ggtcggtgggactttcgtccgt 80
>34981_isc-mir-278:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 ggtcggtgggactttcgtccgttt 79
||||||||||| ||||||||||||
Sbjct: 66 ggtcggtgggattttcgtccgttt 89
>35078_api-mir-278:mirbase
Length = 66
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 ggtcggtgggactttcgtccgttt 79
|||||||||||||||||| |||||
Sbjct: 43 ggtcggtgggactttcgttcgttt 66
