miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36796_dmo-mir-279:mirbase
Length = 93
Score = 139 bits (70), Expect = 4e-34
Identities = 89/94 (94%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 1 gtactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttg 60
|||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 1 gtactactgtttttagtgagtgagggtccagtgtttcacatt-gtttgcttaagtatttg 59
Query: 61 tgactagatccacactcattaacaacggtagttc 94
|||||||||||||||||||||| |||||||||||
Sbjct: 60 tgactagatccacactcattaaaaacggtagttc 93
>36873_dpe-mir-279:mirbase
Length = 93
Score = 129 bits (65), Expect = 4e-31
Identities = 87/93 (93%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct: 2 tactactgtttttagtgagtgagggtccagtgtttcacatt-gattttcttagtatttgt 60
Query: 62 gactagatccacactcattaacaacggtagttc 94
||||||||||||||||||||| |||||||||||
Sbjct: 61 gactagatccacactcattaataacggtagttc 93
>36953_dps-mir-279:mirbase
Length = 95
Score = 129 bits (65), Expect = 4e-31
Identities = 87/93 (93%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||
Sbjct: 4 tactactgtttttagtgagtgagggtccagtgtttcacatt-gattttcttagtatttgt 62
Query: 62 gactagatccacactcattaacaacggtagttc 94
||||||||||||||||||||| |||||||||||
Sbjct: 63 gactagatccacactcattaataacggtagttc 95
>37452_dwi-mir-279:mirbase
Length = 91
Score = 123 bits (62), Expect = 2e-29
Identities = 86/93 (92%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61
||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 1 tactactgtttttagtgagtgagggtccagtgtttcacattaaatattt--agtatttgt 58
Query: 62 gactagatccacactcattaacaacggtagttc 94
||||||||||||||||||||| |||||||||||
Sbjct: 59 gactagatccacactcattaataacggtagttc 91
>36199_der-mir-279:mirbase
Length = 93
Score = 113 bits (57), Expect = 2e-26
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61
||||||||||||||||| ||| ||||||||||||||||||| |||| | | ||||||||
Sbjct: 2 tactactgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 60
Query: 62 gactagatccacactcattaacaacggtagttc 94
||||||||||||||||||||| |||||||||||
Sbjct: 61 gactagatccacactcattaataacggtagttc 93
>36421_dme-mir-279:mirbase
Length = 100
Score = 113 bits (57), Expect = 2e-26
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61
||||||||||||||||| ||| ||||||||||||||||||| |||| | | ||||||||
Sbjct: 9 tactactgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 67
Query: 62 gactagatccacactcattaacaacggtagttc 94
||||||||||||||||||||| |||||||||||
Sbjct: 68 gactagatccacactcattaataacggtagttc 100
>36422_dme-mir-279:mirbase
Length = 100
Score = 113 bits (57), Expect = 2e-26
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61
||||||||||||||||| ||| ||||||||||||||||||| |||| | | ||||||||
Sbjct: 9 tactactgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 67
Query: 62 gactagatccacactcattaacaacggtagttc 94
||||||||||||||||||||| |||||||||||
Sbjct: 68 gactagatccacactcattaataacggtagttc 100
>37528_dya-mir-279:mirbase
Length = 93
Score = 113 bits (57), Expect = 2e-26
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61
||||||||||||||||| |||||||||||||| |||||||| |||| | | ||||||||
Sbjct: 2 tactactgtttttagtgggtgagggtccagtgcttcacattgattttctta-gtatttgt 60
Query: 62 gactagatccacactcattaacaacggtagttc 94
||||||||||||||||||||| |||||||||||
Sbjct: 61 gactagatccacactcattaataacggtagttc 93
>36121_dan-mir-279:mirbase
Length = 89
Score = 111 bits (56), Expect = 9e-26
Identities = 84/93 (90%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61
||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||
Sbjct: 1 tactactgtttttagtgggtgagggtccagtgtttcacattgatttct----gtatttgt 56
Query: 62 gactagatccacactcattaacaacggtagttc 94
||||||||||||||||||||| |||||||||||
Sbjct: 57 gactagatccacactcattaataacggtagttc 89
>36288_dgr-mir-279:mirbase
Length = 91
Score = 111 bits (56), Expect = 9e-26
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgtgac 64
|||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||
Sbjct: 5 tactgtttttagtgggtgagggtccagtgtttcacattgtttattt---gtatttgtgac 61
Query: 65 tagatccacactcattaacaacggtagttc 94
|||||||||||||||||| |||||||||||
Sbjct: 62 tagatccacactcattaaaaacggtagttc 91
>37159_dse-mir-279:mirbase
Length = 93
Score = 105 bits (53), Expect = 6e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61
|||| |||||||||||| ||| ||||||||||||||||||| |||| | | ||||||||
Sbjct: 2 tactgctgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 60
Query: 62 gactagatccacactcattaacaacggtagttc 94
||||||||||||||||||||| |||||||||||
Sbjct: 61 gactagatccacactcattaataacggtagttc 93
>37237_dsi-mir-279:mirbase
Length = 93
Score = 105 bits (53), Expect = 6e-24
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 tactactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgt 61
|||| |||||||||||| ||| ||||||||||||||||||| |||| | | ||||||||
Sbjct: 2 tactgctgtttttagtgggtgggggtccagtgtttcacattgattttctta-gtatttgt 60
Query: 62 gactagatccacactcattaacaacggtagttc 94
||||||||||||||||||||| |||||||||||
Sbjct: 61 gactagatccacactcattaataacggtagttc 93
>35209_aae-mir-279:mirbase
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tgtgactagatccacactcattaacaa 85
|||||||||||||||||||||||||||
Sbjct: 59 tgtgactagatccacactcattaacaa 85
>36037_cqu-mir-279:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tgtgactagatccacactcattaacaa 85
|||||||||||||||||||||||||||
Sbjct: 47 tgtgactagatccacactcattaacaa 73
>35304_aga-mir-279:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttgtgactagatccacactcattaa 82
|||||||||||||||||||||||||
Sbjct: 53 ttgtgactagatccacactcattaa 77
>35383_ame-mir-279:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttgtgactagatccacactcattaa 82
|||||||||||||||||||||||||
Sbjct: 64 ttgtgactagatccacactcattaa 88
>37662_nvi-mir-279:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tgtgactagatccacactcattaa 82
||||||||||||||||||||||||
Sbjct: 65 tgtgactagatccacactcattaa 88
>37771_tca-mir-279a:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 gtgactagatccacactcattaa 82
|||||||||||||||||||||||
Sbjct: 42 gtgactagatccacactcattaa 64
>37772_tca-mir-279a:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 gtgactagatccacactcattaa 82
|||||||||||||||||||||||
Sbjct: 42 gtgactagatccacactcattaa 64
