miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36800_dmo-mir-282:mirbase
Length = 91
Score = 149 bits (75), Expect = 4e-37
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 3 tttccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagaca 62
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 1 tttccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagaca 60
Query: 63 tagcctatgagaggttaggtgtaccaagggg 93
||||||||||||||||||||||| |||||||
Sbjct: 61 tagcctatgagaggttaggtgtagcaagggg 91
>36203_der-mir-282:mirbase
Length = 97
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 3 tttccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagaca 62
|||||||||||||||||||||||||||||||||||||||||||| | | || |||||||
Sbjct: 3 tttccttataaatctagcctctactaggctttgtctgtgcattcaaaagccgatcagaca 62
Query: 63 tagcctatgagaggttaggtgtaccaagg 91
|||||||| ||||||||||||||||||||
Sbjct: 63 tagcctataagaggttaggtgtaccaagg 91
>36428_dme-mir-282:mirbase
Length = 97
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 3 tttccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagaca 62
||||||| |||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 3 tttccttctaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagaca 62
Query: 63 tagcctatgagaggttaggtgtaccaagg 91
|||||||| ||||||||||||||||||||
Sbjct: 63 tagcctataagaggttaggtgtaccaagg 91
>36429_dme-mir-282:mirbase
Length = 97
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 3 tttccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagaca 62
||||||| |||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 3 tttccttctaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagaca 62
Query: 63 tagcctatgagaggttaggtgtaccaagg 91
|||||||| ||||||||||||||||||||
Sbjct: 63 tagcctataagaggttaggtgtaccaagg 91
>37163_dse-mir-282:mirbase
Length = 97
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 3 tttccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagaca 62
||||||| |||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 3 tttccttttaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagaca 62
Query: 63 tagcctatgagaggttaggtgtaccaagg 91
|||||||| ||||||||||||||||||||
Sbjct: 63 tagcctataagaggttaggtgtaccaagg 91
>37239_dsi-mir-282:mirbase
Length = 97
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 3 tttccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagaca 62
||||||| |||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 3 tttccttttaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagaca 62
Query: 63 tagcctatgagaggttaggtgtaccaagg 91
|||||||| ||||||||||||||||||||
Sbjct: 63 tagcctataagaggttaggtgtaccaagg 91
>36125_dan-mir-282:mirbase
Length = 90
Score = 127 bits (64), Expect = 2e-30
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 4 ttccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagacat 63
||||||||| ||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct: 1 ttccttatagatctagcctctactaggctttgtctgtgcattcgaaagtcgatcagacat 60
Query: 64 agcctatgagaggttaggtgtaccaagg 91
||||||| ||||||||||||||||||||
Sbjct: 61 agcctataagaggttaggtgtaccaagg 88
>37532_dya-mir-282:mirbase
Length = 90
Score = 127 bits (64), Expect = 2e-30
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 4 ttccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagacat 63
||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||
Sbjct: 1 ttccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacat 60
Query: 64 agcctatgagaggttaggtgtaccaagg 91
||||||| ||||||||||||||||||||
Sbjct: 61 agcctataagaggttaggtgtaccaagg 88
>36877_dpe-mir-282:mirbase
Length = 91
Score = 109 bits (55), Expect = 4e-25
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 ccttataaatctagcctctactaggctttgtctgtgcattcg-atatacggtcagacata 64
|||||||||||||||||||||||||||||||||||||||| | | | || |||||||||
Sbjct: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
Query: 65 gcctatgagaggttaggtgtaccaagg 91
|||||| ||||||||||||||||||||
Sbjct: 63 gcctataagaggttaggtgtaccaagg 89
>36957_dps-mir-282:mirbase
Length = 94
Score = 109 bits (55), Expect = 4e-25
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 ccttataaatctagcctctactaggctttgtctgtgcattcg-atatacggtcagacata 64
|||||||||||||||||||||||||||||||||||||||| | | | || |||||||||
Sbjct: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
Query: 65 gcctatgagaggttaggtgtaccaagg 91
|||||| ||||||||||||||||||||
Sbjct: 63 gcctataagaggttaggtgtaccaagg 89
>37456_dwi-mir-282:mirbase
Length = 87
Score = 107 bits (54), Expect = 1e-24
Identities = 80/87 (91%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 5 tccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagacata 64
||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct: 3 tccttataaatctagcctctactaggctttgtctgtgcatttg-gat----tcagacata 57
Query: 65 gcctatgagaggttaggtgtaccaagg 91
|||||||||||||||||||||||||||
Sbjct: 58 gcctatgagaggttaggtgtaccaagg 84
>36292_dgr-mir-282:mirbase
Length = 94
Score = 91.7 bits (46), Expect = 8e-20
Identities = 76/85 (89%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 4 ttccttataaatctagcctctactaggctttgtctgtgca--ttcgatatacggtcagac 61
|||||||||||||||||||||||||||||||||||||||| || || | ||||||
Sbjct: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
Query: 62 atagcctatgagaggttaggtgtac 86
|||||||||||||||||||||||||
Sbjct: 61 atagcctatgagaggttaggtgtac 85
>35211_aae-mir-282-1:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 aatctagcctctactaggctttgtctgt 40
|||||||||||| |||||||||||||||
Sbjct: 29 aatctagcctctcctaggctttgtctgt 56
>35212_aae-mir-282-2:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 aatctagcctctactaggctttgtctgt 40
|||||||||||| |||||||||||||||
Sbjct: 29 aatctagcctctcctaggctttgtctgt 56
>35306_aga-mir-282:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 aatctagcctctactaggctttgtctgt 40
|||||||||||| |||||||||||||||
Sbjct: 12 aatctagcctcttctaggctttgtctgt 39
>37783_tca-mir-282:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tagcctctactaggctttgtctgtg 41
|||||||| ||||||||||||||||
Sbjct: 9 tagcctctcctaggctttgtctgtg 33
>37784_tca-mir-282:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tagcctctactaggctttgtctgtg 41
|||||||| ||||||||||||||||
Sbjct: 9 tagcctctcctaggctttgtctgtg 33
>35387_ame-mir-282:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 17 tagcctctactaggctttgtctgt 40
|||||||| |||||||||||||||
Sbjct: 19 tagcctctcctaggctttgtctgt 42
>37621_nlo-mir-282:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 17 tagcctctactaggctttgtctgt 40
|||||||| |||||||||||||||
Sbjct: 6 tagcctctcctaggctttgtctgt 29
>37664_nvi-mir-282:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 17 tagcctctactaggctttgtctgt 40
|||||||| |||||||||||||||
Sbjct: 19 tagcctctcctaggctttgtctgt 42
