miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36803_dmo-mir-285:mirbase
Length = 100
Score = 151 bits (76), Expect = 1e-37
Identities = 92/96 (95%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 tcaaattgaagaactgagatcgattggtgcatagatatcgcccaaaaagt-aattcattt 59
||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||
Sbjct: 1 tcaaattgaagaactgagatcgattggtgcatagataacgcccaaaaagtcattttattt 60
Query: 60 caattctagcaccattcgaaatcagtgctttttatt 95
||||||||||||||||||||||||||||||||||||
Sbjct: 61 caattctagcaccattcgaaatcagtgctttttatt 96
>36295_dgr-mir-285:mirbase
Length = 99
Score = 133 bits (67), Expect = 3e-32
Identities = 88/95 (92%)
Strand = Plus / Plus
Query: 1 tcaaattgaagaactgagatcgattggtgcatagatatcgcccaaaaagtaattcatttc 60
|||||||||||||||||||||||||||||||||||||||| |||| || | || |||||
Sbjct: 1 tcaaattgaagaactgagatcgattggtgcatagatatcgtccaagaataatttaatttc 60
Query: 61 aattctagcaccattcgaaatcagtgctttttatt 95
|||||||||||||||||||||||||||||| ||||
Sbjct: 61 aattctagcaccattcgaaatcagtgctttgtatt 95
>37166_dse-mir-285:mirbase
Length = 98
Score = 79.8 bits (40), Expect = 3e-16
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tcaaattgaagaactgagatcgattggtgcatagatatcgcccaaaaagtaattcatttc 60
|||||| ||||||||||||||||||||||||||||||| | |||| | ||| |||
Sbjct: 1 tcaaatcgaagaactgagatcgattggtgcatagatat--caggaaaacccactcaattc 58
Query: 61 aattctagcaccattcgaaatcagtgctttt 91
|| ||||||||||||||||||||||||||||
Sbjct: 59 aactctagcaccattcgaaatcagtgctttt 89
>36128_dan-mir-285:mirbase
Length = 98
Score = 75.8 bits (38), Expect = 5e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 54 tcatttcaattctagcaccattcgaaatcagtgctttt 91
||||||||||||||||||||||||||||||||||||||
Sbjct: 52 tcatttcaattctagcaccattcgaaatcagtgctttt 89
>37242_dsi-mir-285:mirbase
Length = 98
Score = 73.8 bits (37), Expect = 2e-14
Identities = 73/84 (86%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 8 gaagaactgagatcgattggtgcatagatatcgcccaaaaagtaattcatttcaattcta 67
||||||||||||||||||||||||||||||| | |||| | ||| ||||| ||||
Sbjct: 8 gaagaactgagatcgattggtgcatagatat--caggaaaacccactcaattcaactcta 65
Query: 68 gcaccattcgaaatcagtgctttt 91
||||||||||||||||||||||||
Sbjct: 66 gcaccattcgaaatcagtgctttt 89
>36206_der-mir-285:mirbase
Length = 98
Score = 67.9 bits (34), Expect = 1e-12
Identities = 74/86 (86%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 8 gaagaactgagatcgattggtgcatagatatcgcccaaaaag--taattcatttcaattc 65
||||||||||||||||||||||||||||||| ||| ||| | ||| ||||| ||
Sbjct: 8 gaagaactgagatcgattggtgcatagatat----caagaagccccactcaattcaactc 63
Query: 66 tagcaccattcgaaatcagtgctttt 91
||||||||||||||||||||||||||
Sbjct: 64 tagcaccattcgaaatcagtgctttt 89
>37535_dya-mir-285:mirbase
Length = 98
Score = 65.9 bits (33), Expect = 5e-12
Identities = 72/84 (85%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 8 gaagaactgagatcgattggtgcatagatatcgcccaaaaagtaattcatttcaattcta 67
||||||||||||||||||||||||||||||| | | || | ||| ||||| ||||
Sbjct: 8 gaagaactgagatcgattggtgcatagatat--caagacaacccactcaattcaactcta 65
Query: 68 gcaccattcgaaatcagtgctttt 91
||||||||||||||||||||||||
Sbjct: 66 gcaccattcgaaatcagtgctttt 89
>36434_dme-mir-285:mirbase
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 gaagaactgagatcgattggtgcatagatatc 39
||||||||||||||||||||||||||||||||
Sbjct: 8 gaagaactgagatcgattggtgcatagatatc 39
>36435_dme-mir-285:mirbase
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 gaagaactgagatcgattggtgcatagatatc 39
||||||||||||||||||||||||||||||||
Sbjct: 8 gaagaactgagatcgattggtgcatagatatc 39
>36960_dps-mir-285:mirbase
Length = 100
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 gaagaactgagatcgattggtgcatagatatc 39
||||||||||||||||||||||||||||||||
Sbjct: 8 gaagaactgagatcgattggtgcatagatatc 39
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 57 tttcaattctagcaccattcgaaatcagtgctttt 91
|||||| ||||||||||||||||||||||||||||
Sbjct: 56 tttcaactctagcaccattcgaaatcagtgctttt 90
>37459_dwi-mir-285:mirbase
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 58 ttcaattctagcaccattcgaaatcagtgctt 89
||||||||||||||||||||||||||||||||
Sbjct: 53 ttcaattctagcaccattcgaaatcagtgctt 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 actgagatcgattggtgcatagata 37
|||||||||||||||||||||||||
Sbjct: 1 actgagatcgattggtgcatagata 25
>24655_bfl-mir-29b:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 tctagcaccattcgaaatcagtgcttt 90
|||||||||||| ||||||||||||||
Sbjct: 60 tctagcaccatttgaaatcagtgcttt 86
>35214_aae-mir-285:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 tctagcaccattcgaaatcagt 85
||||||||||||||||||||||
Sbjct: 55 tctagcaccattcgaaatcagt 76
>36040_cqu-mir-285:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 tctagcaccattcgaaatcagt 85
||||||||||||||||||||||
Sbjct: 44 tctagcaccattcgaaatcagt 65
>25453_pma-mir-29c:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 62 attctagcaccattcgaaatcagtg 86
|||||||||||||| ||||||||||
Sbjct: 51 attctagcaccatttgaaatcagtg 75
>35560_bmo-mir-285:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 64 tctagcaccattcgaaatcagtgct 88
|||||||||||||||| ||||||||
Sbjct: 53 tctagcaccattcgaattcagtgct 77
>38736_cte-mir-29b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 tagcaccattcgaaatcagtgctt 89
|||||||||| |||||||||||||
Sbjct: 61 tagcaccatttgaaatcagtgctt 84
