miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36805_dmo-mir-287:mirbase
Length = 62
Score = 123 bits (62), Expect = 2e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 7 aatgtttgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatgtttgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 60
Query: 67 aa 68
||
Sbjct: 61 aa 62
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
||||||||||||| |||||||||||||
Sbjct: 44 acacatttacaattattgtaaatgtgt 18
>36298_dgr-mir-287-1:mirbase
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 2 tgcataatgtttgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtt 61
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgcataatgcttgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtt 60
Query: 62 tgcacaa 68
|||||||
Sbjct: 61 tgcacaa 67
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
|||||||||||| |||||||||||||
Sbjct: 49 acacatttacaaatattgtaaatgtgt 23
>36299_dgr-mir-287-2:mirbase
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 2 tgcataatgtttgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtt 61
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tgcataatgcttgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtt 60
Query: 62 tgcacaa 68
|||||||
Sbjct: 61 tgcacaa 67
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
|||||||||||| |||||||||||||
Sbjct: 49 acacatttacaaatattgtaaatgtgt 23
>36130_dan-mir-287:mirbase
Length = 73
Score = 111 bits (56), Expect = 6e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
||||||||||||| |||||||||||||
Sbjct: 51 acacatttacaattattgtaaatgtgt 25
>36881_dpe-mir-287:mirbase
Length = 75
Score = 111 bits (56), Expect = 6e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36962_dps-mir-287:mirbase
Length = 80
Score = 111 bits (56), Expect = 6e-26
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36208_der-mir-287:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
||||||||||||| |||||||||||||
Sbjct: 66 acacatttacaattattgtaaatgtgt 40
>36438_dme-mir-287:mirbase
Length = 93
Score = 107 bits (54), Expect = 1e-24
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>37168_dse-mir-287:mirbase
Length = 71
Score = 105 bits (53), Expect = 4e-24
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 14 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 63
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>37244_dsi-mir-287:mirbase
Length = 71
Score = 105 bits (53), Expect = 4e-24
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 14 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 63
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>37461_dwi-mir-287:mirbase
Length = 73
Score = 103 bits (52), Expect = 1e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 68
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 16 tgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
|||||||||||||||||||||||||||
Sbjct: 53 acacatttacaataattgtaaatgtgt 27
>37537_dya-mir-287:mirbase
Length = 77
Score = 97.6 bits (49), Expect = 9e-22
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgca 65
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 16 tgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgca 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 24 acacatttacaataattgtaaatgtgt 50
||||||||||||| | |||||||||||
Sbjct: 53 acacatttacaattactgtaaatgtgt 27
