miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36806_dmo-mir-288:mirbase
Length = 96
Score = 168 bits (85), Expect = 5e-43
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 5 cgcgtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttg 64
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 4 cgcgtcgtaattagctgtgcacagcgttgctggcgataattaatgacgttggtcacgttg 63
Query: 65 gtttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||||||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggccg 96
>36300_dgr-mir-288:mirbase
Length = 96
Score = 157 bits (79), Expect = 2e-39
Identities = 91/95 (95%)
Strand = Plus / Plus
Query: 3 gccgcgtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgt 62
|||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct: 2 gccgtgtcgtaattagctgtgcagaacgtagctggcgataattaatgacgttggtcacgt 61
Query: 63 tggtttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||||||||||||||||
Sbjct: 62 tggtttcatgtcgatttcatttcatgacacggccg 96
>36963_dps-mir-288:mirbase
Length = 96
Score = 131 bits (66), Expect = 1e-31
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
|||||||||||| | | ||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 7 gtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttggtt 66
Query: 68 tcatgtcgatttcatttcatgacacggccg 97
||||||||||||||||||||||||||||||
Sbjct: 67 tcatgtcgatttcatttcatgacacggccg 96
>36882_dpe-mir-288:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
|||||||||||| | | ||| |||||| ||||| |||||||||| |||||||||||||||
Sbjct: 7 gtcgtaattagcagggtacagcgttgccggcgaaaattaatgacgttggtcacgttggtt 66
Query: 68 tcatgtcgatttcatttcatgacacggccg 97
||||||||||||||||||||||||||||||
Sbjct: 67 tcatgtcgatttcatttcatgacacggccg 96
>36131_dan-mir-288:mirbase
Length = 92
Score = 121 bits (61), Expect = 1e-28
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
|||||||||||| | ||||| |||| |||||||||||||||| |||||||||||||||
Sbjct: 4 gtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttggtt 63
Query: 68 tcatgtcgatttcatttcatgacacggcc 96
|||||||||||||||||||||||||||||
Sbjct: 64 tcatgtcgatttcatttcatgacacggcc 92
>37538_dya-mir-288:mirbase
Length = 96
Score = 121 bits (61), Expect = 1e-28
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
|||||||||||| | |||| |||||| |||||||||||||||| ||||||||||||||
Sbjct: 8 gtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttggtt 67
Query: 68 tcatgtcgatttcatttcatgacacggcc 96
|||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggcc 96
>37462_dwi-mir-288:mirbase
Length = 94
Score = 117 bits (59), Expect = 2e-27
Identities = 84/91 (92%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 8 gtcgtaattagctgtgcacaacgttgct-ggcgataattaatgactttggtcacgttggt 66
|||||||||||| | ||||||| || | |||||||||||||||| ||||||||||||||
Sbjct: 4 gtcgtaattagcagcgcacaacattcgtcggcgataattaatgacgttggtcacgttggt 63
Query: 67 ttcatgtcgatttcatttcatgacacggccg 97
|||||||||||||||||||||||||||||||
Sbjct: 64 ttcatgtcgatttcatttcatgacacggccg 94
>37169_dse-mir-288:mirbase
Length = 97
Score = 115 bits (58), Expect = 6e-27
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
|||||||||||| | |||| | |||| |||||||||||||||| ||||||||||||||
Sbjct: 8 gtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttggtt 67
Query: 68 tcatgtcgatttcatttcatgacacggccg 97
||||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggccg 97
>37245_dsi-mir-288:mirbase
Length = 97
Score = 115 bits (58), Expect = 6e-27
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
|||||||||||| | |||| | |||| |||||||||||||||| ||||||||||||||
Sbjct: 8 gtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttggtt 67
Query: 68 tcatgtcgatttcatttcatgacacggccg 97
||||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggccg 97
>36209_der-mir-288:mirbase
Length = 97
Score = 107 bits (54), Expect = 1e-24
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
|||||||||||| | || | |||||| |||||||||||||||| ||||||||||||||
Sbjct: 8 gtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttggtt 67
Query: 68 tcatgtcgatttcatttcatgacacggccg 97
||||||||||||||||||| ||||||||||
Sbjct: 68 tcatgtcgatttcatttcaggacacggccg 97
>36439_dme-mir-288:mirbase
Length = 97
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 36 ggcgataattaatgactttggtcacgttggtttcatgtcgatttcatttcatgacacggc 95
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 ggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacggc 95
Query: 96 cg 97
||
Sbjct: 96 cg 97
