miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36305_dgr-mir-308:mirbase
Length = 63
Score = 101 bits (51), Expect = 5e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgtttatttt-gaaaatcaaatcacaggattatactgt 59
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttatttttgaaaatcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>36811_dmo-mir-308:mirbase
Length = 62
Score = 99.6 bits (50), Expect = 2e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgtttattttgaaaatcaaatcacaggattatactgtg 60
||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttattataaaaatcaaatcacaggattatactgtg 60
Query: 61 ag 62
||
Sbjct: 61 ag 62
>36137_dan-mir-308:mirbase
Length = 62
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgtttattttgaaaatcaaatcacaggattatactgtg 60
||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttggtttgaaactcaaatcacaggattatactgtg 60
Query: 61 ag 62
||
Sbjct: 61 ag 62
>36215_der-mir-308:mirbase
Length = 63
Score = 85.7 bits (43), Expect = 3e-18
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgttta-ttttgaaaatcaaatcacaggattatactgt 59
||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaaatcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>37175_dse-mir-308:mirbase
Length = 63
Score = 77.8 bits (39), Expect = 8e-16
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgttta-ttttgaaaatcaaatcacaggattatactgt 59
||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaactcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>37251_dsi-mir-308:mirbase
Length = 63
Score = 77.8 bits (39), Expect = 8e-16
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgttta-ttttgaaaatcaaatcacaggattatactgt 59
||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaactcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>37544_dya-mir-308:mirbase
Length = 63
Score = 77.8 bits (39), Expect = 8e-16
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgttta-ttttgaaaatcaaatcacaggattatactgt 59
||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttccttttgcaactcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>36453_dme-mir-308:mirbase
Length = 63
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgttta-ttttgaaaatcaaatcacaggattatactgt 59
||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaatccaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>36454_dme-mir-308:mirbase
Length = 63
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgttta-ttttgaaaatcaaatcacaggattatactgt 59
||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgtttcgttttgcaatccaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>37468_dwi-mir-308:mirbase
Length = 63
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgtttattttgaaaa-tcaaatcacaggattatactgt 59
||||||||||| |||||||||||||| | |||| || ||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgttcaatttgtcaactcaaatcacaggattatactgt 60
Query: 60 gag 62
|||
Sbjct: 61 gag 63
>36887_dpe-mir-308:mirbase
Length = 62
Score = 67.9 bits (34), Expect = 7e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgtttattttgaaaatcaaatcacaggattatactgtg 60
||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgttgtgtctgaaacgcaaatcacaggattatactgtg 60
Query: 61 ag 62
||
Sbjct: 61 ag 62
>36970_dps-mir-308:mirbase
Length = 62
Score = 67.9 bits (34), Expect = 7e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 ctcgcagtatacttttgtgttttgtttattttgaaaatcaaatcacaggattatactgtg 60
||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct: 1 ctcgcagtatatttttgtgttttgttgtgtctgaaacgcaaatcacaggattatactgtg 60
Query: 61 ag 62
||
Sbjct: 61 ag 62
>35221_aae-mir-308:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 tcaaatcacaggattatactgtgag 62
||||||||||||| |||||||||||
Sbjct: 49 tcaaatcacaggagtatactgtgag 73
>35312_aga-mir-308:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 tcaaatcacaggattatactgtgag 62
||||||||||||| |||||||||||
Sbjct: 56 tcaaatcacaggagtatactgtgag 80
>36043_cqu-mir-308:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 tcaaatcacaggattatactgtgag 62
||||||||||||| |||||||||||
Sbjct: 44 tcaaatcacaggagtatactgtgag 68
