miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36309_dgr-mir-315:mirbase
Length = 82
Score = 97.6 bits (49), Expect = 1e-21
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 6 atatcattttgattgttgctcagaaagccctgcattcaatacttggctttcgagtaataa 65
|||| |||||||||||||||||||||||| | || | | ||||||||||||||||||||
Sbjct: 6 atataattttgattgttgctcagaaagcctttcacttgacacttggctttcgagtaataa 65
Query: 66 tcgaaaccaaataagcg 82
|||||||||||||||||
Sbjct: 66 tcgaaaccaaataagcg 82
>36815_dmo-mir-315:mirbase
Length = 83
Score = 73.8 bits (37), Expect = 2e-14
Identities = 69/79 (87%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 5 tatatcattttgattgttgctcagaaagccctgcattcaat---acttggctttcgagta 61
||||| ||||||||||||||||||||||||| ||| || || |||||||||||||
Sbjct: 5 tatataattttgattgttgctcagaaagcccgtaatttaacttaacatggctttcgagta 64
Query: 62 ataatcgaaaccaaataag 80
|||||||||||||||||||
Sbjct: 65 ataatcgaaaccaaataag 83
>36467_dme-mir-315:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 68/79 (86%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 5 tatatcattttgattgttgctcagaaagccctgcattcaatac---ttggctttcgagta 61
||||| |||||||||||||||||||||||||| |||| ||| |||||||||||| |
Sbjct: 5 tatataattttgattgttgctcagaaagccct-cattgtttaccagttggctttcgagca 63
Query: 62 ataatcgaaaccaaataag 80
||||| ||||||| |||||
Sbjct: 64 ataattgaaaccagataag 82
>36468_dme-mir-315:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 1e-09
Identities = 68/79 (86%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 5 tatatcattttgattgttgctcagaaagccctgcattcaatac---ttggctttcgagta 61
||||| |||||||||||||||||||||||||| |||| ||| |||||||||||| |
Sbjct: 5 tatataattttgattgttgctcagaaagccct-cattgtttaccagttggctttcgagca 63
Query: 62 ataatcgaaaccaaataag 80
||||| ||||||| |||||
Sbjct: 64 ataattgaaaccagataag 82
>36045_cqu-mir-315:mirbase
Length = 93
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 attttgattgttgctcagaaagccctgcattc 42
|||||||||||||||||||||||| |||||||
Sbjct: 16 attttgattgttgctcagaaagccgtgcattc 47
>36144_dan-mir-315:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatatcattttgattgttgctcagaaagccct 36
||||| ||||||||||||||||||||||||||
Sbjct: 5 tatataattttgattgttgctcagaaagccct 36
>36226_der-mir-315:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatatcattttgattgttgctcagaaagccct 36
||||| ||||||||||||||||||||||||||
Sbjct: 5 tatataattttgattgttgctcagaaagccct 36
>37182_dse-mir-315:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatatcattttgattgttgctcagaaagccct 36
||||| ||||||||||||||||||||||||||
Sbjct: 5 tatataattttgattgttgctcagaaagccct 36
>37258_dsi-mir-315:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatatcattttgattgttgctcagaaagccct 36
||||| ||||||||||||||||||||||||||
Sbjct: 5 tatataattttgattgttgctcagaaagccct 36
>37471_dwi-mir-315:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatatcattttgattgttgctcagaaagccct 36
||||| ||||||||||||||||||||||||||
Sbjct: 5 tatataattttgattgttgctcagaaagccct 36
>37551_dya-mir-315-1:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatatcattttgattgttgctcagaaagccct 36
||||| ||||||||||||||||||||||||||
Sbjct: 5 tatataattttgattgttgctcagaaagccct 36
>37552_dya-mir-315-2:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatatcattttgattgttgctcagaaagccct 36
||||| ||||||||||||||||||||||||||
Sbjct: 5 tatataattttgattgttgctcagaaagccct 36
>35225_aae-mir-315:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 attttgattgttgctcagaaagccctgcatt 41
|||||||||||||||||||||||| ||||||
Sbjct: 15 attttgattgttgctcagaaagccgtgcatt 45
>38775_cte-mir-315:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagccct 36
|||||||||||||||||||||||||
Sbjct: 21 ttttgattgttgctcagaaagccct 45
>36890_dpe-mir-315:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagccct 36
|||||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagccct 36
>36974_dps-mir-315:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagccct 36
|||||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagccct 36
>38885_lgi-mir-315:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attttgattgttgctcagaaagcc 34
||||||||||||||||||||||||
Sbjct: 20 attttgattgttgctcagaaagcc 43
>35314_aga-mir-315:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attttgattgttgctcagaaagcc 34
||||||||||||||||||||||||
Sbjct: 7 attttgattgttgctcagaaagcc 30
>34896_sko-mir-315:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 21 ttttgattgttgctcagaaagcc 43
>35031_dpu-mir-315:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 21 ttttgattgttgctcagaaagcc 43
>35085_api-mir-315:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 1 ttttgattgttgctcagaaagcc 23
>35392_ame-mir-315:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>37623_nlo-mir-315:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>37668_nvi-mir-315:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>37798_tca-mir-315:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>25540_pma-mir-315:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 tttgattgttgctcagaaagcc 34
||||||||||||||||||||||
Sbjct: 11 tttgattgttgctcagaaagcc 32
>34986_isc-mir-315:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaa 30
|||||||||||||||||||
Sbjct: 21 ttttgattgttgctcagaa 39
