miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37473_dwi-mir-317:mirbase
Length = 85
Score = 121 bits (61), Expect = 8e-29
Identities = 79/84 (94%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 2 gcaattgccgctgggatacaccctgtgctcgctttgaat--tgtgcaagcaagtgaacac 59
|||| |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
Query: 60 agctggtggtatccagtggccgtt 83
||||||||||||||||||||||||
Sbjct: 61 agctggtggtatccagtggccgtt 84
>36892_dpe-mir-317-1:mirbase
Length = 90
Score = 115 bits (58), Expect = 5e-27
Identities = 79/85 (92%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 tgcaattgccgctgggatacaccctgtgctcgctttgaatt--gtgcaagcaagtgaaca 58
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
Query: 59 cagctggtggtatccagtggccgtt 83
|||||||||||||||| ||||||||
Sbjct: 61 cagctggtggtatccaatggccgtt 85
>36893_dpe-mir-317-2:mirbase
Length = 90
Score = 115 bits (58), Expect = 5e-27
Identities = 79/85 (92%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 tgcaattgccgctgggatacaccctgtgctcgctttgaatt--gtgcaagcaagtgaaca 58
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
Query: 59 cagctggtggtatccagtggccgtt 83
|||||||||||||||| ||||||||
Sbjct: 61 cagctggtggtatccaatggccgtt 85
>36976_dps-mir-317:mirbase
Length = 90
Score = 115 bits (58), Expect = 5e-27
Identities = 79/85 (92%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 tgcaattgccgctgggatacaccctgtgctcgctttgaatt--gtgcaagcaagtgaaca 58
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 60
Query: 59 cagctggtggtatccagtggccgtt 83
|||||||||||||||| ||||||||
Sbjct: 61 cagctggtggtatccaatggccgtt 85
>36146_dan-mir-317:mirbase
Length = 91
Score = 111 bits (56), Expect = 8e-26
Identities = 71/75 (94%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 11 gctgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtgg 68
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtgg 70
Query: 69 tatccagtggccgtt 83
|||||||||||||||
Sbjct: 71 tatccagtggccgtt 85
>36228_der-mir-317:mirbase
Length = 92
Score = 107 bits (54), Expect = 1e-24
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 70
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 71 tccagtggccgtt 83
|||||||||||||
Sbjct: 74 tccagtggccgtt 86
>36471_dme-mir-317:mirbase
Length = 92
Score = 107 bits (54), Expect = 1e-24
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 70
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 71 tccagtggccgtt 83
|||||||||||||
Sbjct: 74 tccagtggccgtt 86
>36472_dme-mir-317:mirbase
Length = 92
Score = 107 bits (54), Expect = 1e-24
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 70
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 71 tccagtggccgtt 83
|||||||||||||
Sbjct: 74 tccagtggccgtt 86
>37184_dse-mir-317:mirbase
Length = 92
Score = 107 bits (54), Expect = 1e-24
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 70
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 71 tccagtggccgtt 83
|||||||||||||
Sbjct: 74 tccagtggccgtt 86
>37260_dsi-mir-317:mirbase
Length = 92
Score = 107 bits (54), Expect = 1e-24
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 70
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 71 tccagtggccgtt 83
|||||||||||||
Sbjct: 74 tccagtggccgtt 86
>37555_dya-mir-317:mirbase
Length = 92
Score = 107 bits (54), Expect = 1e-24
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 70
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 71 tccagtggccgtt 83
|||||||||||||
Sbjct: 74 tccagtggccgtt 86
>36817_dmo-mir-317:mirbase
Length = 86
Score = 103 bits (52), Expect = 2e-23
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 1 tgcaattgccgctgggatacaccctgtgctcgctttgaattgtgcaagcaagtgaacaca 60
|||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 tgcaattgccgctgggatacaccctgtgctcgctttgagtttatgttgcaagtgaacaca 60
Query: 61 gctggtggtatccagtggccgttg 84
||||||||||||||| ||||||||
Sbjct: 61 gctggtggtatccagaggccgttg 84
>36311_dgr-mir-317:mirbase
Length = 90
Score = 101 bits (51), Expect = 8e-23
Identities = 79/86 (91%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 1 tgcaattgccgctgggataca-ccctgtgctcgctttgaat--tgtgcaagcaagtgaac 57
|||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct: 1 tgcaattgccactgggatattgccctgtgctcgctttgaatattgtgtaagcaagtgaac 60
Query: 58 acagctggtggtatccagtggccgtt 83
||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtt 86
>35227_aae-mir-317-1:mirbase
Length = 92
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 14 gggatacaccctgtgctcgctttgaattgtgcaagcaagtgaacacagctggtggtatc- 72
|||||||||||||||||||||||| || | || | ||||||||||||||||||||||
Sbjct: 18 gggatacaccctgtgctcgctttgcat--tcgaaactagtgaacacagctggtggtatct 75
Query: 73 cagtggcc 80
||||||||
Sbjct: 76 cagtggcc 83
>35228_aae-mir-317-2:mirbase
Length = 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 14 gggatacaccctgtgctcgctttgaattgtgcaagcaagtgaacacagctggtggtatc- 72
|||||||||||||||||||||||| || | || | ||||||||||||||||||||||
Sbjct: 16 gggatacaccctgtgctcgctttgcat--tcgaaactagtgaacacagctggtggtatct 73
Query: 73 cagtggcc 80
||||||||
Sbjct: 74 cagtggcc 81
>36047_cqu-mir-317:mirbase
Length = 92
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 14 gggatacaccctgtgctcgctttgaattgtgcaagcaagtgaacacagctggtggtatc- 72
|||||||||||||||||||||||| || | || | ||||||||||||||||||||||
Sbjct: 18 gggatacaccctgtgctcgctttgcat--tcgaaactagtgaacacagctggtggtatct 75
Query: 73 cagtggcc 80
||||||||
Sbjct: 76 cagtggcc 83
>35087_api-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatc 72
||||||||||||||||||||||
Sbjct: 55 agtgaacacagctggtggtatc 76
>35567_bmo-mir-317:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatc 72
||||||||||||||||||||||
Sbjct: 53 agtgaacacagctggtggtatc 74
>37801_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatc 72
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>37802_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatc 72
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>38886_lgi-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gtgaacacagctggtggtatc 72
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>38776_cte-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gtgaacacagctggtggtatc 72
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35032_dpu-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gtgaacacagctggtggtatc 72
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35394_ame-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gtgaacacagctggtggtatc 72
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>37592_ngi-mir-317:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gtgaacacagctggtggtatc 72
|||||||||||||||||||||
Sbjct: 51 gtgaacacagctggtggtatc 71
>37669_nvi-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gtgaacacagctggtggtatc 72
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>34987_isc-mir-317:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gtgaacacagctggtggtat 71
||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtat 79
>35315_aga-mir-317:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatc-cagtggccg 81
|||||||||| ||||||||||| |||||||||
Sbjct: 54 agtgaacacatctggtggtatctcagtggccg 85
