miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36312_dgr-mir-318:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 61 tctcataag 69
|||||||||
Sbjct: 61 tctcataag 69
>36818_dmo-mir-318:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttatgggatacactaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 61 tctcataag 69
|||||||||
Sbjct: 61 tctcataag 69
>36894_dpe-mir-318:mirbase
Length = 68
Score = 89.7 bits (45), Expect = 2e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
|||||||||| |||||||||||||||||||| || || | ||||||||||||||||||||
Sbjct: 1 tttatgggatgcaccaagttcagttttgtcacatttcga-gcatcactgggctttgttta 59
Query: 61 tctcataag 69
|||||||||
Sbjct: 60 tctcataag 68
>36977_dps-mir-318:mirbase
Length = 68
Score = 89.7 bits (45), Expect = 2e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
|||||||||| |||||||||||||||||||| || || | ||||||||||||||||||||
Sbjct: 1 tttatgggatgcaccaagttcagttttgtcacatttcga-gcatcactgggctttgttta 59
Query: 61 tctcataag 69
|||||||||
Sbjct: 60 tctcataag 68
>37475_dwi-mir-318-2:mirbase
Length = 69
Score = 85.7 bits (43), Expect = 4e-18
Identities = 65/70 (92%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtcca--agcatcactgggctttgtt 58
|||||||||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcat-tccacgagcatcactgggctttgtt 59
Query: 59 tatctcataa 68
||||||||||
Sbjct: 60 tatctcataa 69
>37474_dwi-mir-318-1:mirbase
Length = 71
Score = 83.8 bits (42), Expect = 1e-17
Identities = 64/69 (92%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtcca--agcatcactgggctttgtt 58
|||||||||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcat-tccacgagcatcactgggctttgtt 59
Query: 59 tatctcata 67
|||||||||
Sbjct: 60 tatctcata 68
>36229_der-mir-318:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 3e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
|||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttc-aagcatcactgggctttgttta 59
Query: 61 tctcat 66
||||||
Sbjct: 60 tctcat 65
>36473_dme-mir-318:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 3e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
|||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttc-aagcatcactgggctttgttta 59
Query: 61 tctcat 66
||||||
Sbjct: 60 tctcat 65
>36474_dme-mir-318:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 3e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
|||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttc-aagcatcactgggctttgttta 59
Query: 61 tctcat 66
||||||
Sbjct: 60 tctcat 65
>37185_dse-mir-318:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 3e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
|||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttc-aagcatcactgggctttgttta 59
Query: 61 tctcat 66
||||||
Sbjct: 60 tctcat 65
>37261_dsi-mir-318:mirbase
Length = 68
Score = 67.9 bits (34), Expect = 8e-13
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
|||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttt-aagcatcactgggctttgttta 59
Query: 61 tctcat 66
||||||
Sbjct: 60 tctcat 65
>37556_dya-mir-318:mirbase
Length = 68
Score = 67.9 bits (34), Expect = 8e-13
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
|||||||||||||| |||||||||||||| | | |||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcgcac-tacaagcatcactgggctttgttta 59
Query: 61 tctcat 66
||||||
Sbjct: 60 tctcat 65
>36147_dan-mir-318:mirbase
Length = 69
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 40 agcatcactgggctttgtttatctcataag 69
||||||||||||||||||||||||||||||
Sbjct: 40 agcatcactgggctttgtttatctcataag 69
