miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36829_dpe-mir-3:mirbase
Length = 73
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 4/68 (5%)
Strand = Plus / Plus
Query: 7 tgggatgcattttgtgcagttatgtcttcatgtgataattctctcatcactgggcaaagt 66
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 6 tgggatgcattttgtgcagttatgtct--acgtgatcat--cctcatcactgggcaaagt 61
Query: 67 gtgtctca 74
||||||||
Sbjct: 62 gtgtctca 69
>36905_dps-mir-3:mirbase
Length = 73
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 4/68 (5%)
Strand = Plus / Plus
Query: 7 tgggatgcattttgtgcagttatgtcttcatgtgataattctctcatcactgggcaaagt 66
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 6 tgggatgcattttgtgcagttatgtct--acgtgatcat--cctcatcactgggcaaagt 61
Query: 67 gtgtctca 74
||||||||
Sbjct: 62 gtgtctca 69
>36158_der-mir-3:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 tctctcatcactgggcaaagtgtgtctca 74
|||| ||||||||||||||||||||||||
Sbjct: 36 tctcacatcactgggcaaagtgtgtctca 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgggatgcattttgtgcagttatgt 31
|||||||||| ||||||||||||||
Sbjct: 6 tgggatgcatcttgtgcagttatgt 30
>36331_dme-mir-3:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 tctctcatcactgggcaaagtgtgtctca 74
|||| ||||||||||||||||||||||||
Sbjct: 36 tctcacatcactgggcaaagtgtgtctca 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgggatgcattttgtgcagttatgt 31
|||||||||| ||||||||||||||
Sbjct: 6 tgggatgcatcttgtgcagttatgt 30
>36332_dme-mir-3:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 tctctcatcactgggcaaagtgtgtctca 74
|||| ||||||||||||||||||||||||
Sbjct: 36 tctcacatcactgggcaaagtgtgtctca 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgggatgcattttgtgcagttatgt 31
|||||||||| ||||||||||||||
Sbjct: 6 tgggatgcatcttgtgcagttatgt 30
>37118_dse-mir-3:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 tctctcatcactgggcaaagtgtgtctca 74
|||| ||||||||||||||||||||||||
Sbjct: 36 tctcacatcactgggcaaagtgtgtctca 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgggatgcattttgtgcagttatgt 31
|||||||||| ||||||||||||||
Sbjct: 6 tgggatgcatcttgtgcagttatgt 30
>37196_dsi-mir-3:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 tctctcatcactgggcaaagtgtgtctca 74
|||| ||||||||||||||||||||||||
Sbjct: 36 tctcacatcactgggcaaagtgtgtctca 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgggatgcattttgtgcagttatgt 31
|||||||||| ||||||||||||||
Sbjct: 6 tgggatgcatcttgtgcagttatgt 30
>37486_dya-mir-3:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 tctctcatcactgggcaaagtgtgtctca 74
|||| ||||||||||||||||||||||||
Sbjct: 36 tctcacatcactgggcaaagtgtgtctca 64
>36080_dan-mir-3:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 catcactgggcaaagtgtgtctca 74
||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctca 68
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 ttgggatgcattttgtgcagttatg 30
|||||| ||||||||||||||||||
Sbjct: 5 ttgggacgcattttgtgcagttatg 29
>36240_dgr-mir-3-1:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 catcactgggcaaagtgtgtctca 74
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
>36241_dgr-mir-3-2:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 catcactgggcaaagtgtgtctca 74
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
>36756_dmo-mir-3:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 catcactgggcaaagtgtgtctca 74
||||||||||||||||||||||||
Sbjct: 40 catcactgggcaaagtgtgtctca 63
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7 tgggatgcattttgtgcag 25
|||||||||||||||||||
Sbjct: 1 tgggatgcattttgtgcag 19
>37332_dvi-mir-3:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 catcactgggcaaagtgtgtctca 74
||||||||||||||||||||||||
Sbjct: 40 catcactgggcaaagtgtgtctca 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tgggatgcattttgtgcagttatgtct 33
||||||||||||||||| |||||||||
Sbjct: 1 tgggatgcattttgtgcggttatgtct 27
>35313_aga-mir-309:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 49 ctcatcactgggcaaagtgtgtctcataa 77
|||||||||||||||||| |||| |||||
Sbjct: 45 ctcatcactgggcaaagtttgtcgcataa 73
>35222_aae-mir-309a-1:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 50 tcatcactgggcaaagtgtgtctcataa 77
||||||||||||||||| |||| |||||
Sbjct: 62 tcatcactgggcaaagtttgtcgcataa 89
>35223_aae-mir-309a-2:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 50 tcatcactgggcaaagtgtgtctcataa 77
||||||||||||||||| |||| |||||
Sbjct: 61 tcatcactgggcaaagtttgtcgcataa 88
