miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36831_dpe-mir-5:mirbase
Length = 72
Score = 121 bits (61), Expect = 7e-29
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgattt 60
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgtta-attcaccgttacatatcacagtgattt 59
Query: 61 tcctttatagcgc 73
|||||||||||||
Sbjct: 60 tcctttatagcgc 72
>36907_dps-mir-5:mirbase
Length = 72
Score = 121 bits (61), Expect = 7e-29
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgattt 60
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgtta-attcaccgttacatatcacagtgattt 59
Query: 61 tcctttatagcgc 73
|||||||||||||
Sbjct: 60 tcctttatagcgc 72
>36758_dmo-mir-5:mirbase
Length = 72
Score = 105 bits (53), Expect = 4e-24
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgattt 60
|||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgtta-atcgaccgttacatatcacagtgattt 59
Query: 61 tcctttatagcgc 73
|||||||||||||
Sbjct: 60 tcctttatagcgc 72
>37334_dvi-mir-5:mirbase
Length = 70
Score = 101 bits (51), Expect = 6e-23
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 2 ctaaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgatttt 61
|||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct: 1 ctaaaaggaacgatcgttgtgatatgcgttc-attaaccgttacatatcacagtgatttt 59
Query: 62 cctttatagcg 72
|||||||||||
Sbjct: 60 cctttatagcg 70
>36244_dgr-mir-5-1:mirbase
Length = 73
Score = 89.7 bits (45), Expect = 2e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgattt 60
||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
Query: 61 tcctttatagcgc 73
|||||||||||||
Sbjct: 61 tcctttatagcgc 73
>36245_dgr-mir-5-2:mirbase
Length = 73
Score = 89.7 bits (45), Expect = 2e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgattt 60
||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
Query: 61 tcctttatagcgc 73
|||||||||||||
Sbjct: 61 tcctttatagcgc 73
>36082_dan-mir-5:mirbase
Length = 67
Score = 77.8 bits (39), Expect = 9e-16
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgattttc 62
||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtt-tatccctcgttacatatcacagtgattttc 59
Query: 63 ctttata 69
|||||||
Sbjct: 60 ctttata 66
>37488_dya-mir-5:mirbase
Length = 64
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 4/67 (5%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgattttc 62
||||||||||||||||||||||||||||| ||| || | | |||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtt--att--ccctaacatatcacagtgattttc 56
Query: 63 ctttata 69
|||||||
Sbjct: 57 ctttata 63
>36160_der-mir-5:mirbase
Length = 64
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgcgtt 31
|||||||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtt 29
>36335_dme-mir-5:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatg 27
|||||||||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatg 27
>36336_dme-mir-5:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatg 27
|||||||||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatg 27
>37120_dse-mir-5:mirbase
Length = 64
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatg 27
|||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatg 25
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 atatcacagtgattttcctttata 69
||||||||||||||||||||||||
Sbjct: 40 atatcacagtgattttcctttata 63
>37198_dsi-mir-5:mirbase
Length = 63
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatg 27
|||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatg 25
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 atatcacagtgattttcctttata 69
||||||||||||||||||||||||
Sbjct: 39 atatcacagtgattttcctttata 62
