miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37416_dwi-mir-9b-1:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 61 tttattaccaaaaaccaaatggtttttgca 90
||||||||||||||||||||||||||||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>37127_dse-mir-9b:mirbase
Length = 89
Score = 133 bits (67), Expect = 2e-32
Identities = 85/90 (94%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 2 gcatattatttggtctttggtgattttagctgtatggtgtataag--tattccatagagc 59
Query: 61 tttattaccaaaaaccaaatggtttttgca 90
||||||||||||||||||||||||| ||||
Sbjct: 60 tttattaccaaaaaccaaatggtttctgca 89
>36255_dgr-mir-9b:mirbase
Length = 89
Score = 125 bits (63), Expect = 6e-30
Identities = 84/90 (93%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
|||||||||||| |||||||||||||||||| |||||||| | |||||||||| |||||
Sbjct: 2 gcatattatttgctctttggtgattttagctctatggtgt--gcgcataatccacagagc 59
Query: 61 tttattaccaaaaaccaaatggtttttgca 90
||||||||||||||||||||||||||||||
Sbjct: 60 tttattaccaaaaaccaaatggtttttgca 89
>37341_dvi-mir-9b:mirbase
Length = 89
Score = 125 bits (63), Expect = 6e-30
Identities = 84/90 (93%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
|||||||||||| ||||||||||||||||||||||||||| | || || ||||||||||
Sbjct: 2 gcatattatttgctctttggtgattttagctgtatggtgt--gcgcgtattccatagagc 59
Query: 61 tttattaccaaaaaccaaatggtttttgca 90
||||||||||||||||||||||||||||||
Sbjct: 60 tttattaccaaaaaccaaatggtttttgca 89
>36349_dme-mir-9b:mirbase
Length = 91
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
|||||||||||| ||||||||||||||||||||||||||| | | ||| ||||||||||
Sbjct: 2 gcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagagc 61
Query: 61 tttattaccaaaaaccaaatggtttttgca 90
||||||||||||||||||||||||| ||||
Sbjct: 62 tttattaccaaaaaccaaatggtttctgca 91
>36350_dme-mir-9b:mirbase
Length = 91
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
|||||||||||| ||||||||||||||||||||||||||| | | ||| ||||||||||
Sbjct: 2 gcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagagc 61
Query: 61 tttattaccaaaaaccaaatggtttttgca 90
||||||||||||||||||||||||| ||||
Sbjct: 62 tttattaccaaaaaccaaatggtttctgca 91
>36089_dan-mir-9b:mirbase
Length = 88
Score = 119 bits (60), Expect = 4e-28
Identities = 80/86 (93%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 5 attatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagcttta 64
|||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 6 attatttgttctttggtgattttagctgtatggtgtct---catattccatagagcttta 62
Query: 65 ttaccaaaaaccaaatggtttttgca 90
||||||||||||||||||||||||||
Sbjct: 63 ttaccaaaaaccaaatggtttttgca 88
>36765_dmo-mir-9b:mirbase
Length = 89
Score = 117 bits (59), Expect = 1e-27
Identities = 83/90 (92%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
|||||||||||| |||||||||||||||||||||||||| || || || ||||||||||
Sbjct: 2 gcatattatttgttctttggtgattttagctgtatggtg--tgcgcgtattccatagagc 59
Query: 61 tttattaccaaaaaccaaatggtttttgca 90
||||||||||||||||||||||| ||||||
Sbjct: 60 tttattaccaaaaaccaaatggtctttgca 89
>36167_der-mir-9b:mirbase
Length = 89
Score = 109 bits (55), Expect = 3e-25
Identities = 82/90 (91%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
|||||||||||| ||||||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 gcatattatttgctctttggtgattttagctgtatggtgtgtatgtgt--tccatagagc 59
Query: 61 tttattaccaaaaaccaaatggtttttgca 90
||||||||||||||||||||||||||||||
Sbjct: 60 tttattaccaaaaaccaaatggtttttgca 89
>36838_dpe-mir-9b:mirbase
Length = 91
Score = 101 bits (51), Expect = 8e-23
Identities = 80/87 (91%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 5 attatttggtctttggtgattttagctgtatggtgtatgagcata-atccatagagcttt 63
|||||||| ||||||||||||||||||||||||||||| | || | ||||||||||||||
Sbjct: 6 attatttgatctttggtgattttagctgtatggtgtat-atcaaagatccatagagcttt 64
Query: 64 attaccaaaaaccaaatggtttttgca 90
|| ||||||| ||||||||||||||||
Sbjct: 65 atcaccaaaacccaaatggtttttgca 91
>36914_dps-mir-9b:mirbase
Length = 91
Score = 101 bits (51), Expect = 8e-23
Identities = 80/87 (91%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 5 attatttggtctttggtgattttagctgtatggtgtatgagcata-atccatagagcttt 63
|||||||| ||||||||||||||||||||||||||||| | || | ||||||||||||||
Sbjct: 6 attatttgatctttggtgattttagctgtatggtgtat-atcaaagatccatagagcttt 64
Query: 64 attaccaaaaaccaaatggtttttgca 90
|| ||||||| ||||||||||||||||
Sbjct: 65 atcaccaaaacccaaatggtttttgca 91
>37496_dya-mir-9b:mirbase
Length = 91
Score = 99.6 bits (50), Expect = 3e-22
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
|||||||||||| ||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 2 gcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagagc 61
Query: 61 tttattaccaaaaaccaaatggtttttgca 90
||||||||||||||||||||||||| ||||
Sbjct: 62 tttattaccaaaaaccaaatggtttctgca 91
>35174_aae-mir-9b:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tctttggtgattttagctgtatg 36
|||||||||||||||||||||||
Sbjct: 15 tctttggtgattttagctgtatg 37
>35276_aga-mir-9b:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 ttatttggtctttggtgattttagctgtatg 36
||||| || ||||||||||||||||||||||
Sbjct: 7 ttattgggactttggtgattttagctgtatg 37
