miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36091_dan-mir-10:mirbase
Length = 77
Score = 123 bits (62), Expect = 2e-29
Identities = 69/70 (98%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttttatactag-ttttaaggacaaattcggttct 61
Query: 63 agagaggttt 72
||||||||||
Sbjct: 62 agagaggttt 71
>37498_dya-mir-10:mirbase
Length = 77
Score = 123 bits (62), Expect = 2e-29
Identities = 69/70 (98%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttttatactag-ttttaaggacaaattcggttct 61
Query: 63 agagaggttt 72
||||||||||
Sbjct: 62 agagaggttt 71
>36169_der-mir-10:mirbase
Length = 77
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggtt 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ctacgtctaccctgtagatccgaatttgttttatactag-ctttaaggacaaattcggtt 59
Query: 61 ctagagaggttt 72
||||||||||||
Sbjct: 60 ctagagaggttt 71
>36353_dme-mir-10:mirbase
Length = 77
Score = 115 bits (58), Expect = 5e-27
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttttatactag-ctttaaggacaaattcggttct 61
Query: 63 agagaggttt 72
||||||||||
Sbjct: 62 agagaggttt 71
>36354_dme-mir-10:mirbase
Length = 77
Score = 115 bits (58), Expect = 5e-27
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttttatactag-ctttaaggacaaattcggttct 61
Query: 63 agagaggttt 72
||||||||||
Sbjct: 62 agagaggttt 71
>37129_dse-mir-10:mirbase
Length = 77
Score = 115 bits (58), Expect = 5e-27
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttttatactag-ctttaaggacaaattcggttct 61
Query: 63 agagaggttt 72
||||||||||
Sbjct: 62 agagaggttt 71
>37205_dsi-mir-10:mirbase
Length = 77
Score = 115 bits (58), Expect = 5e-27
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttttatactag-ctttaaggacaaattcggttct 61
Query: 63 agagaggttt 72
||||||||||
Sbjct: 62 agagaggttt 71
>36257_dgr-mir-10:mirbase
Length = 77
Score = 99.6 bits (50), Expect = 3e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
|||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttgtacactagcttt-aaggacaaattcggttct 61
Query: 63 agagaggttt 72
||||||||||
Sbjct: 62 agagaggttt 71
>36840_dpe-mir-10:mirbase
Length = 77
Score = 99.6 bits (50), Expect = 3e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttttacattag-ctttaaggacaaattcggttct 61
Query: 63 agagaggttt 72
||||||||||
Sbjct: 62 agagaggttt 71
>36916_dps-mir-10:mirbase
Length = 77
Score = 99.6 bits (50), Expect = 3e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttttacattag-ctttaaggacaaattcggttct 61
Query: 63 agagaggttt 72
||||||||||
Sbjct: 62 agagaggttt 71
>37343_dvi-mir-10:mirbase
Length = 77
Score = 99.6 bits (50), Expect = 3e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct: 3 acgtccaccctgtagatccgaatttgttgtacactagtttt-aaggacaaattcggttct 61
Query: 63 agagaggttt 72
||||||||||
Sbjct: 62 agagaggttt 71
>36767_dmo-mir-10:mirbase
Length = 77
Score = 87.7 bits (44), Expect = 1e-18
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 3 acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62
|||||||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 3 acgtctaccctgtagatccgaatttgttgtaccatag-ctttaaggacaaattcggttct 61
Query: 63 agagaggtttaagtgg 78
||||||||||| ||||
Sbjct: 62 agagaggtttatgtgg 77
>35050_api-mir-10:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttt 31
|||| ||||||||||||||||||||||||||
Sbjct: 6 ctacatctaccctgtagatccgaatttgttt 36
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggttt 72
|||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggttt 71
>35177_aae-mir-10:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttt 31
|||| ||||||||||||||||||||||||||
Sbjct: 7 ctacatctaccctgtagatccgaatttgttt 37
>35348_ame-mir-10-1:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttt 31
|||| ||||||||||||||||||||||||||
Sbjct: 14 ctacatctaccctgtagatccgaatttgttt 44
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggttt 72
|||||||||||||||||||||||||
Sbjct: 55 gacaaattcggttctagagaggttt 79
>35349_ame-mir-10-2:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttt 31
|||| ||||||||||||||||||||||||||
Sbjct: 14 ctacatctaccctgtagatccgaatttgttt 44
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggttt 72
|||||||||||||||||||||||||
Sbjct: 55 gacaaattcggttctagagaggttt 79
>35523_bmo-mir-10:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttt 31
|||| ||||||||||||||||||||||||||
Sbjct: 7 ctacatctaccctgtagatccgaatttgttt 37
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggttt 72
|||||||||||||||||||||||||
Sbjct: 48 gacaaattcggttctagagaggttt 72
>36008_cqu-mir-10:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttt 31
|||| ||||||||||||||||||||||||||
Sbjct: 5 ctacatctaccctgtagatccgaatttgttt 35
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggttt 72
|||||||||||||||||||||||||
Sbjct: 50 gacaaattcggttctagagaggttt 74
>37604_nlo-mir-10:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttt 31
|||| ||||||||||||||||||||||||||
Sbjct: 14 ctacatctaccctgtagatccgaatttgttt 44
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggttt 72
|||||||||||||||||||||||||
Sbjct: 55 gacaaattcggttctagagaggttt 79
>37637_nvi-mir-10:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttt 31
|||| ||||||||||||||||||||||||||
Sbjct: 14 ctacatctaccctgtagatccgaatttgttt 44
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggttt 72
|||||||||||||||||||||||||
Sbjct: 55 gacaaattcggttctagagaggttt 79
>37705_tca-mir-10:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttt 31
|||| ||||||||||||||||||||||||||
Sbjct: 3 ctacatctaccctgtagatccgaatttgttt 33
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggttt 72
|||||||||||||||||||||||||
Sbjct: 44 gacaaattcggttctagagaggttt 68
>37706_tca-mir-10:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgttt 31
|||| ||||||||||||||||||||||||||
Sbjct: 3 ctacatctaccctgtagatccgaatttgttt 33
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggttt 72
|||||||||||||||||||||||||
Sbjct: 44 gacaaattcggttctagagaggttt 68
>34964_isc-mir-10:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgt 29
|||| ||||||||||||||||||||||||
Sbjct: 1 ctacatctaccctgtagatccgaatttgt 29
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 49 acaaattcggttctagagagg 69
|||||||||||||||||||||
Sbjct: 43 acaaattcggttctagagagg 63
>35001_dpu-mir-10:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ctacgtctaccctgtagatccgaatttgt 29
|||| ||||||||||||||||||||||||
Sbjct: 13 ctacatctaccctgtagatccgaatttgt 41
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggtt 71
||||||||||||||||||||||||
Sbjct: 55 gacaaattcggttctagagaggtt 78
>35278_aga-mir-10:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 2e-07
Identities = 55/64 (85%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgttttatactagtttttaaggacaaattcggttctagagag 68
||||||||||||||||||||||| | || | |||| ||||||||||||||||||||
Sbjct: 22 accctgtagatccgaatttgtttgaattta--tattaataacaaattcggttctagagag 79
Query: 69 gttt 72
||||
Sbjct: 80 gttt 83
>37563_lmi-mir-10:mirbase
Length = 59
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gacaaattcggttctagagaggttt 72
|||||||||||||||||||||||||
Sbjct: 35 gacaaattcggttctagagaggttt 59
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgttt 31
||||||||||||||||||||||||
Sbjct: 1 taccctgtagatccgaatttgttt 24
>38853_lgi-mir-10:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 tacgtctaccctgtagatccgaatttgt 29
||||| ||||||||||||||||||||||
Sbjct: 15 tacgtttaccctgtagatccgaatttgt 42
>34866_sko-mir-10:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tctaccctgtagatccgaatttgt 29
||||||||||||||||||||||||
Sbjct: 18 tctaccctgtagatccgaatttgt 41
>24650_bfl-mir-10a:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>25694_xtr-mir-10a:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>25889_gga-mir-10a:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>26621_cfa-mir-10:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 1 taccctgtagatccgaatttgt 22
>26943_eca-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>27331_mdo-mir-10a:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 15 taccctgtagatccgaatttgt 36
>27477_age-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>27587_sla-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>27648_mml-mir-10a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>28256_ggo-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>28358_hsa-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>30040_ppa-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>30144_ptr-mir-10a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 21 taccctgtagatccgaatttgt 42
>31423_oan-mir-10a:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 28 taccctgtagatccgaatttgt 49
>31773_mmu-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>32655_rno-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>32656_rno-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>33126_bta-mir-10a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>33909_ssc-mir-10a:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 9 taccctgtagatccgaatttgt 30
>34197_dre-mir-10a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 18 taccctgtagatccgaatttgt 39
>34809_spu-mir-10:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgt 29
|||||||||||||||||||||
Sbjct: 27 accctgtagatccgaatttgt 47
>34543_fru-mir-10c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tctaccctgtagatccgaatttgt 29
||||||||||||||||| ||||||
Sbjct: 13 tctaccctgtagatccggatttgt 36
>34691_tni-mir-10c:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tctaccctgtagatccgaatttgt 29
||||||||||||||||| ||||||
Sbjct: 19 tctaccctgtagatccggatttgt 42
