miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36258_dgr-mir-11:mirbase
Length = 79
Score = 65.9 bits (33), Expect = 4e-12
Identities = 67/78 (85%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 5 gtcaagatctctctctgtgacctgcgtgagatttatcatatatgaaaaccgcatcacagt 64
||||||| ||||||||||||| ||||||| ||| || |||||| |||||||||||
Sbjct: 6 gtcaagaactctctctgtgacttgcgtgaactttc----atgtgaaaatcgcatcacagt 61
Query: 65 ctgagttcttgctgagcg 82
||||||||||||||||||
Sbjct: 62 ctgagttcttgctgagcg 79
>36768_dmo-mir-11:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 43 tatatgaaaaccgcatcacagtctgagttcttgctgagcg 82
|||||| |||||||||||||||||||||||||||| ||||
Sbjct: 41 tatatgcaaaccgcatcacagtctgagttcttgcttagcg 80
>37344_dvi-mir-11:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 43 tatatgaaaaccgcatcacagtctgagttcttgctgagcg 82
|||||| |||||||||||||||||||||||||||| ||||
Sbjct: 41 tatatgcaaaccgcatcacagtctgagttcttgcttagcg 80
>36170_der-mir-11:mirbase
Length = 75
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 ccgcatcacagtctgagttcttgctgagcg 82
||||||||||||||||||||||||||||||
Sbjct: 45 ccgcatcacagtctgagttcttgctgagcg 74
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 2 cttgtcaagatctctctctgtgacctgcgtg 32
|||| ||||| || |||||||||||||||||
Sbjct: 4 cttgccaagaactttctctgtgacctgcgtg 34
>37499_dya-mir-11:mirbase
Length = 75
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 ccgcatcacagtctgagttcttgctgagcg 82
||||||||||||||||||||||||||||||
Sbjct: 45 ccgcatcacagtctgagttcttgctgagcg 74
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 cttgtcaagatctctctctgtgacctgcgtg 32
|||||||||| || |||||||||||||||||
Sbjct: 4 cttgtcaagaactttctctgtgacctgcgtg 34
>36355_dme-mir-11:mirbase
Length = 75
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 ccgcatcacagtctgagttcttgctgag 80
||||||||||||||||||||||||||||
Sbjct: 45 ccgcatcacagtctgagttcttgctgag 72
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 2 cttgtcaagatctctctctgtgacctgcgtg 32
|||||||||| || ||||||||||| |||||
Sbjct: 4 cttgtcaagaactttctctgtgacccgcgtg 34
>36356_dme-mir-11:mirbase
Length = 75
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 ccgcatcacagtctgagttcttgctgag 80
||||||||||||||||||||||||||||
Sbjct: 45 ccgcatcacagtctgagttcttgctgag 72
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 2 cttgtcaagatctctctctgtgacctgcgtg 32
|||||||||| || ||||||||||| |||||
Sbjct: 4 cttgtcaagaactttctctgtgacccgcgtg 34
>37130_dse-mir-11:mirbase
Length = 75
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 ccgcatcacagtctgagttcttgctgag 80
||||||||||||||||||||||||||||
Sbjct: 45 ccgcatcacagtctgagttcttgctgag 72
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 2 cttgtcaagatctctctctgtgacctgcgtg 32
|||||||||| || ||||||||||| |||||
Sbjct: 4 cttgtcaagaactttctctgtgacccgcgtg 34
>37206_dsi-mir-11:mirbase
Length = 75
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 ccgcatcacagtctgagttcttgctgag 80
||||||||||||||||||||||||||||
Sbjct: 45 ccgcatcacagtctgagttcttgctgag 72
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 2 cttgtcaagatctctctctgtgacctgcgtg 32
|||||||||| || ||||||||||| |||||
Sbjct: 4 cttgtcaagaactttctctgtgacccgcgtg 34
>36841_dpe-mir-11:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 catcacagtctgagttcttgctgagcg 82
|||||||||||||||||||||||||||
Sbjct: 45 catcacagtctgagttcttgctgagcg 71
Score = 38.2 bits (19), Expect = 0.001
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 1 tcttgtcaagatctctctctgtgacctgcgtgagattta 39
||||||||||| || |||||||||||||||| |||||
Sbjct: 2 tcttgtcaagaacttattctgtgacctgcgtgacattta 40
>36917_dps-mir-11:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 catcacagtctgagttcttgctgagcg 82
|||||||||||||||||||||||||||
Sbjct: 45 catcacagtctgagttcttgctgagcg 71
Score = 38.2 bits (19), Expect = 0.001
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 1 tcttgtcaagatctctctctgtgacctgcgtgagattta 39
||||||||||| || |||||||||||||||| |||||
Sbjct: 2 tcttgtcaagaacttattctgtgacctgcgtgacattta 40
>36092_dan-mir-11:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 catcacagtctgagttcttgctgag 80
|||||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgctgag 76
>35178_aae-mir-11:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 catcacagtctgagttcttgct 77
||||||||||||||||||||||
Sbjct: 67 catcacagtctgagttcttgct 88
>35279_aga-mir-11:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 catcacagtctgagttcttgct 77
||||||||||||||||||||||
Sbjct: 63 catcacagtctgagttcttgct 84
>36009_cqu-mir-11:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 catcacagtctgagttcttgct 77
||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgct 73
