miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36770_dmo-mir-13a:mirbase
Length = 74
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/76 (90%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaagggggttgtgaaatgttgccattttattcaactcatatcacagccat 62
||||||||||||||||| ||||||||||| |||||| | ||| |||||||||||||||
Sbjct: 3 cgtaactcttcaagggg-ttgtgaaatgtagccattat---caagtcatatcacagccat 58
Query: 63 tttgatgagtttcgtg 78
||||||||||||||||
Sbjct: 59 tttgatgagtttcgtg 74
>37346_dvi-mir-13a:mirbase
Length = 74
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/76 (90%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaagggggttgtgaaatgttgccattttattcaactcatatcacagccat 62
||||||||||||||||| ||||||||||||||| || | ||| |||||||||||||||
Sbjct: 3 cgtaactcttcaagggg-ttgtgaaatgttgccgttat---caagtcatatcacagccat 58
Query: 63 tttgatgagtttcgtg 78
||||||||||||||||
Sbjct: 59 tttgatgagtttcgtg 74
>36094_dan-mir-13a:mirbase
Length = 74
Score = 71.9 bits (36), Expect = 6e-14
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 1 tacgtaactcttcaagggggttgtgaaatgttgccattttattcaactcatatcacagcc 60
|||||||||| |||| ||| | |||||||||||||||| | | |||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggct-gtgaaatgttgccattatct---actcatatcacagcc 56
Query: 61 attttgatgagtttcgtg 78
||||||||||||||||||
Sbjct: 57 attttgatgagtttcgtg 74
>36260_dgr-mir-13a:mirbase
Length = 74
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/76 (88%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 3 cgtaactcttcaagggggttgtgaaatgttgccattttattcaactcatatcacagccat 62
||||||||||||||||| ||||||||||| | ||| | ||| |||||||||||||||
Sbjct: 3 cgtaactcttcaagggg-ttgtgaaatgtgggtattat---caagtcatatcacagccat 58
Query: 63 tttgatgagtttcgtg 78
||||||||||||||||
Sbjct: 59 tttgatgagtttcgtg 74
>37500_dya-mir-13a:mirbase
Length = 75
Score = 67.9 bits (34), Expect = 1e-12
Identities = 70/78 (89%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 1 tacgtaactcttcaagggggttgtgaaatgttgccattttattcaactcatatcacagcc 60
|||||||||| |||| ||| ||||||||||| ||| | |||| | |||||||||||||||
Sbjct: 1 tacgtaactcctcaaaggg-ttgtgaaatgtcgcc-tattat-ctactcatatcacagcc 57
Query: 61 attttgatgagtttcgtg 78
||||||||||||||||||
Sbjct: 58 attttgatgagtttcgtg 75
>36172_der-mir-13a:mirbase
Length = 75
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 46 actcatatcacagccattttgatgagtttcgtg 78
|||||||||||||||||||||||||||||||||
Sbjct: 43 actcatatcacagccattttgatgagtttcgtg 75
>36359_dme-mir-13a:mirbase
Length = 75
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 46 actcatatcacagccattttgatgagtttcgtg 78
|||||||||||||||||||||||||||||||||
Sbjct: 43 actcatatcacagccattttgatgagtttcgtg 75
>36360_dme-mir-13a:mirbase
Length = 75
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 46 actcatatcacagccattttgatgagtttcgtg 78
|||||||||||||||||||||||||||||||||
Sbjct: 43 actcatatcacagccattttgatgagtttcgtg 75
>36843_dpe-mir-13a:mirbase
Length = 74
Score = 65.9 bits (33), Expect = 4e-12
Identities = 55/60 (91%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 19 ggttgtgaaatgttgccattttattcaactcatatcacagccattttgatgagtttcgtg 78
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 18 ggttgtgaaatgttgca--tttat-caaatcatatcacagccattttgatgagtttcgtg 74
>36919_dps-mir-13a:mirbase
Length = 74
Score = 65.9 bits (33), Expect = 4e-12
Identities = 55/60 (91%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 19 ggttgtgaaatgttgccattttattcaactcatatcacagccattttgatgagtttcgtg 78
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 18 ggttgtgaaatgttgca--tttat-caaatcatatcacagccattttgatgagtttcgtg 74
>37132_dse-mir-13a:mirbase
Length = 75
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 46 actcatatcacagccattttgatgagtttcgtg 78
|||||||||||||||||||||||||||||||||
Sbjct: 43 actcatatcacagccattttgatgagtttcgtg 75
>37208_dsi-mir-13a:mirbase
Length = 75
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 46 actcatatcacagccattttgatgagtttcgtg 78
|||||||||||||||||||||||||||||||||
Sbjct: 43 actcatatcacagccattttgatgagtttcgtg 75
>35352_ame-mir-13a:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgag 71
||||||||||||||||||||||||
Sbjct: 61 tcatatcacagccattttgatgag 84
>36845_dpe-mir-13b-2:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ctcatatcacagccattttgatgagttt 74
||||||||||||||||||||| ||||||
Sbjct: 39 ctcatatcacagccattttgacgagttt 66
>36921_dps-mir-13b-2:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 ctcatatcacagccattttgatgagttt 74
||||||||||||||||||||| ||||||
Sbjct: 41 ctcatatcacagccattttgacgagttt 68
>35281_aga-mir-13b:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 53 tcatatcacagccattttgacgagttt 79
>36011_cqu-mir-13:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 52 tcatatcacagccattttgacgagttt 78
>36095_dan-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36096_dan-mir-13b-2:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 39 tcatatcacagccattttgacgagttt 65
>36173_der-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36261_dgr-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72
>36361_dme-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36362_dme-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>36771_dmo-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36772_dmo-mir-13b-2:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36844_dpe-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36920_dps-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37133_dse-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37209_dsi-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37347_dvi-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37348_dvi-mir-13b-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>37501_dya-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37502_dya-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagttt 74
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37572_ngi-mir-13a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 catatcacagccattttgatgag 71
|||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71
>37606_nlo-mir-13a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 catatcacagccattttgatgag 71
|||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71
>37639_nvi-mir-13a:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 catatcacagccattttgatgag 71
|||||||||||||||||||||||
Sbjct: 65 catatcacagccattttgatgag 87
>35180_aae-mir-13:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagtt 73
|||||||||||||||||||| |||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgagtt 73
|||||||||||||||||||| |||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66
>35051_api-mir-13a:mirbase
Length = 61
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 tcatatcacagccattttgatgag 71
|||||||||||||| |||||||||
Sbjct: 37 tcatatcacagccactttgatgag 60
>37713_tca-mir-13b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 51 tatcacagccattttgatgagttt 74
||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69
>37714_tca-mir-13b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 51 tatcacagccattttgatgagttt 74
||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69
>35527_bmo-mir-13b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 47 ctcatatcacagccatttt 65
|||||||||||||||||||
Sbjct: 44 ctcatatcacagccatttt 62
>36238_dgr-mir-2b:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 9e-04
Identities = 48/55 (87%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 9 tcttcaagggggttgtgaaatg-ttgccattttat-tcaactcatatcacagcca 61
||||||| | |||||||||||| ||||| |||||| | ||||||||||||||||
Sbjct: 10 tcttcaaagtggttgtgaaatgtttgcctttttatgcctactcatatcacagcca 64
>37330_dvi-mir-2b:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 9e-04
Identities = 48/55 (87%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 9 tcttcaagggggttgtgaaatg-ttgccattttat-tcaactcatatcacagcca 61
||||||| | |||||||||||| ||||| |||||| | ||||||||||||||||
Sbjct: 10 tcttcaaagtggttgtgaaatgtttgcctttttatgcctactcatatcacagcca 64