miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37431_dwi-mir-79-1:mirbase
Length = 76
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 ttgcctatgctttggcgctttagctgtatgatagatttgactacttcataaagctagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgcctatgctttggcgctttagctgtatgatagatttgactacttcataaagctagatt 60
Query: 61 accaaagcatgggctc 76
||||||||||||||||
Sbjct: 61 accaaagcatgggctc 76
>37354_dvi-mir-79:mirbase
Length = 92
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagatttgactacttcataaagctagattaccaaag 67
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 16 tgctttggcgctttagctgtatgatagatttgaatacttcataaagctagattaccaaag 75
Query: 68 catgggctc 76
||| |||||
Sbjct: 76 cattggctc 84
>36268_dgr-mir-79:mirbase
Length = 76
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgactacttcataaagctagattaccaaagc 68
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9 gctttggcgctttagctgtatgatagatttgaatacttcataaagctagattaccaaagc 68
Query: 69 at 70
||
Sbjct: 69 at 70
>36102_dan-mir-79:mirbase
Length = 91
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 7 atgctttggcgctttagctgtatgatagatttgactacttcataaagctagattaccaaa 66
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 14 atgctttggcgctttagctgtatgatagatttaaatacttcataaagctagattaccaaa 73
Query: 67 gcatgggct 75
|||| ||||
Sbjct: 74 gcattggct 82
>36778_dmo-mir-79:mirbase
Length = 76
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagatttgactacttcataaagctagattaccaaag 67
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 8 tgctttggcgctttagctgtatgatagatttaaatacttcataaagctagattaccaaag 67
Query: 68 catgggctc 76
||| |||||
Sbjct: 68 cattggctc 76
>36180_der-mir-79:mirbase
Length = 92
Score = 105 bits (53), Expect = 4e-24
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagatttga-ctacttcataaagctagattaccaaa 66
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 74
Query: 67 gcatgggct 75
|||| ||||
Sbjct: 75 gcattggct 83
>36375_dme-mir-79:mirbase
Length = 97
Score = 105 bits (53), Expect = 4e-24
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagatttga-ctacttcataaagctagattaccaaa 66
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
Query: 67 gcatgggct 75
|||| ||||
Sbjct: 78 gcattggct 86
>36376_dme-mir-79:mirbase
Length = 97
Score = 105 bits (53), Expect = 4e-24
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagatttga-ctacttcataaagctagattaccaaa 66
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 18 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 77
Query: 67 gcatgggct 75
|||| ||||
Sbjct: 78 gcattggct 86
>37140_dse-mir-79:mirbase
Length = 92
Score = 105 bits (53), Expect = 4e-24
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagatttga-ctacttcataaagctagattaccaaa 66
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaa 74
Query: 67 gcatgggct 75
|||| ||||
Sbjct: 75 gcattggct 83
>37508_dya-mir-79:mirbase
Length = 92
Score = 105 bits (53), Expect = 4e-24
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagatttg-actacttcataaagctagattaccaaa 66
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaa 74
Query: 67 gcatgggct 75
|||| ||||
Sbjct: 75 gcattggct 83
>35186_aae-mir-79:mirbase
Length = 96
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 7 atgctttggcgctttagctgtatgatagatttgactacttcataaagctagattaccaaa 66
||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||
Sbjct: 14 atgctttggcgctttagctgtatgatagaatttaatatttcataaagctagattaccaaa 73
Query: 67 gcatgg 72
||||||
Sbjct: 74 gcatgg 79
>36016_cqu-mir-79:mirbase
Length = 75
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 7 atgctttggcgctttagctgtatgatagatttgactacttcataaagctagattaccaaa 66
||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||
Sbjct: 7 atgctttggcgctttagctgtatgatagaatttaatatttcataaagctagattaccaaa 66
Query: 67 gcatgg 72
||||||
Sbjct: 67 gcatgg 72
>36851_dpe-mir-79:mirbase
Length = 77
Score = 99.6 bits (50), Expect = 3e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagattt-gactacttcataaagctagattaccaaa 66
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 8 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 67
Query: 67 gcatgggctc 76
|||| |||||
Sbjct: 68 gcattggctc 77
>36927_dps-mir-79:mirbase
Length = 84
Score = 99.6 bits (50), Expect = 3e-22
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagattt-gactacttcataaagctagattaccaaa 66
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
Query: 67 gcatgggctc 76
|||| |||||
Sbjct: 73 gcattggctc 82
>35284_aga-mir-79:mirbase
Length = 94
Score = 87.7 bits (44), Expect = 1e-18
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatag-atttg-actacttcataaagctagattaccaaa 66
|||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct: 17 gctttggcgctttagctgtatgatagaatttgaactatttcataaagctagattaccaaa 76
Query: 67 gcat 70
||||
Sbjct: 77 gcat 80
>35520_bmo-mir-9b:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 45 ttcataaagctagattaccaaagcat 70
||||||||||||||||||||||||||
Sbjct: 40 ttcataaagctagattaccaaagcat 15
>35533_bmo-mir-79:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 ttcataaagctagattaccaaagcat 70
||||||||||||||||||||||||||
Sbjct: 55 ttcataaagctagattaccaaagcat 80
>35346_ame-mir-9b:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 40 tcataaagctagattaccaaagca 17
>35360_ame-mir-79:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 64 tcataaagctagattaccaaagca 87
>37699_tca-mir-9b:mirbase
Length = 169
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 92 tcataaagctagattaccaaagca 115
>37700_tca-mir-9b:mirbase
Length = 169
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 92 tcataaagctagattaccaaagca 115
>38743_cte-mir-79:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 tacttcataaagctagattaccaaagc 68
|||||||||||||||| ||||||||||
Sbjct: 55 tacttcataaagctaggttaccaaagc 81
>38729_cte-mir-9:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 tacttcataaagctagattaccaaagc 68
|||||||||||||||| ||||||||||
Sbjct: 53 tacttcataaagctaggttaccaaagc 79
>38542_crm-mir-79:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 acttcataaagctagattaccaaagc 68
||||||||||||||| ||||||||||
Sbjct: 66 acttcataaagctaggttaccaaagc 91
>38099_bma-mir-9:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagc 73
>38107_bma-mir-79:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagc 73
>38190_cbr-mir-79:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 53 cttcataaagctaggttaccaaagc 77
>38623_ppc-mir-79:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 ttcataaagctagattaccaaagc 68
||||||||||||| ||||||||||
Sbjct: 56 ttcataaagctaggttaccaaagc 79
>38316_cel-mir-79:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 ttcataaagctagattaccaaagc 68
||||||||||||| ||||||||||
Sbjct: 58 ttcataaagctaggttaccaaagc 81
