miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37433_dwi-mir-87-1:mirbase
Length = 93
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcatcatttccgg 60
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
>36269_dgr-mir-87:mirbase
Length = 92
Score = 129 bits (65), Expect = 4e-31
Identities = 87/93 (93%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
||||||||||||||||||||||||||||||||||||||| ||||||| | || |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttacc-attgtgacatccaaatccgg 59
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
>37509_dya-mir-87:mirbase
Length = 92
Score = 121 bits (61), Expect = 9e-29
Identities = 87/93 (93%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtta-caattatggtcttc-gatccgg 58
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
>36779_dmo-mir-87:mirbase
Length = 92
Score = 113 bits (57), Expect = 2e-26
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 5 tttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccggttga 64
|||||||||||||||||||||||||||||||||| |||||| | | || |||||||||
Sbjct: 5 tttcattcgcgcctgtatcttgctgaaccgttac-aattgtcacatccaaatccggttga 63
Query: 65 gcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||
Sbjct: 64 gcaaaatttcaggtgtgtgagaaatttgt 92
>37355_dvi-mir-87:mirbase
Length = 92
Score = 113 bits (57), Expect = 2e-26
Identities = 85/93 (91%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
||||||||||||||||||||||||||||||||||||| |||||| || | | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtta-caattgagacatctaaatccgg 59
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
>36181_der-mir-87:mirbase
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 84/93 (90%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
|||||||||||||||||||||||||||||||||||| ||| || || || | | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttgcca-ttatggcctacgat-ccgg 58
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
>36852_dpe-mir-87:mirbase
Length = 93
Score = 97.6 bits (49), Expect = 1e-21
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
||||||||||||||||||||||||||||||||||| ||| | || |||| | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagcca-taatggtctttcatcccgg 59
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
>36928_dps-mir-87:mirbase
Length = 98
Score = 97.6 bits (49), Expect = 1e-21
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
||||||||||||||||||||||||||||||||||| ||| | || |||| | ||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgtagcca-taatggtctttcatcccgg 59
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 60 ttgagcaaaatttcaggtgtgtgagaaatttgt 92
>36103_dan-mir-87:mirbase
Length = 92
Score = 91.7 bits (46), Expect = 8e-20
Identities = 82/93 (88%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccaattgtgatcttcatttccgg 60
||||||||||||||||||||||||||||||||||||||| || | | | |||||
Sbjct: 1 catatttcattcgcgcctgtatcttgctgaaccgttaccgatatggcacagaa--tccgg 58
Query: 61 ttgagcaaaatttcaggtgtgtgagaaatttgt 93
|||||||||||||||||||||||||||||||||
Sbjct: 59 ttgagcaaaatttcaggtgtgtgagaaatttgt 91
>36377_dme-mir-87:mirbase
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 56 tccggttgagcaaaatttcaggtgtgtgagaaat 89
||||||||||||||||||||||||||||||||||
Sbjct: 56 tccggttgagcaaaatttcaggtgtgtgagaaat 89
>36378_dme-mir-87:mirbase
Length = 99
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 56 tccggttgagcaaaatttcaggtgtgtgagaaat 89
||||||||||||||||||||||||||||||||||
Sbjct: 56 tccggttgagcaaaatttcaggtgtgtgagaaat 89
>37141_dse-mir-87:mirbase
Length = 92
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 56 tccggttgagcaaaatttcaggtgtgtgagaaat 89
||||||||||||||||||||||||||||||||||
Sbjct: 54 tccggttgagcaaaatttcaggtgtgtgagaaat 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccg 34
|||||||||||||||||||||||||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccg 34
>37216_dsi-mir-87:mirbase
Length = 92
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 56 tccggttgagcaaaatttcaggtgtgtgagaaat 89
||||||||||||||||||||||||||||||||||
Sbjct: 54 tccggttgagcaaaatttcaggtgtgtgagaaat 87
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 atttcattcgcgcctgtatcttgctgaaccg 34
|||||||||||||||||||||||||||||||
Sbjct: 4 atttcattcgcgcctgtatcttgctgaaccg 34
>35361_ame-mir-87-1:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 62 tgagcaaaatttcaggtgtgtgag 85
|||||||| |||||||||||||||
Sbjct: 71 tgagcaaagtttcaggtgtgtgag 94
