miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37365_dvi-mir-263a:mirbase
Length = 89
Score = 147 bits (74), Expect = 2e-36
Identities = 86/89 (96%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggttttta--taacacgcccgtg 58
Query: 61 atctcttagtggcatctatggtgcgggat 89
|||||||||||||||||||||||||||||
Sbjct: 59 atctcttagtggcatctatggtgcgggat 87
>36280_dgr-mir-263a:mirbase
Length = 89
Score = 139 bits (70), Expect = 4e-34
Identities = 85/89 (95%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggttat--tttaacacgcccgtg 58
Query: 61 atctcttagtggcatctatggtgcgggat 89
|||||||||||||||||||||||||||||
Sbjct: 59 atctcttagtggcatctatggtgcgggat 87
>36789_dmo-mir-263a:mirbase
Length = 89
Score = 139 bits (70), Expect = 4e-34
Identities = 85/89 (95%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggtttt--tctaacacgcccgtg 58
Query: 61 atctcttagtggcatctatggtgcgggat 89
|||||||||||||||||||||||||||||
Sbjct: 59 atctcttagtggcatctatggtgcgggat 87
>36113_dan-mir-263a:mirbase
Length = 90
Score = 115 bits (58), Expect = 6e-27
Identities = 83/90 (92%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
|||||||||||||||||||||||||||||||||||||||| || | ||| |||||||
Sbjct: 1 atctcggcacagttaatggcactggaagaattcacggggtaatttctataca-acccgtg 59
Query: 61 atctcttagtggcatctatggtgcgggatt 90
||||||||||||||||||||||||||||||
Sbjct: 60 atctcttagtggcatctatggtgcgggatt 89
>36405_dme-mir-263a:mirbase
Length = 94
Score = 113 bits (57), Expect = 2e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
|||||||||||||||||||||||||||||||||||||||| || || ||| |||||||
Sbjct: 4 atctcggcacagttaatggcactggaagaattcacggggtaatttttataca-acccgtg 62
Query: 61 atctcttagtggcatctatggtgcg 85
|||||||||||||||||||||||||
Sbjct: 63 atctcttagtggcatctatggtgcg 87
>36406_dme-mir-263a:mirbase
Length = 94
Score = 113 bits (57), Expect = 2e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
|||||||||||||||||||||||||||||||||||||||| || || ||| |||||||
Sbjct: 4 atctcggcacagttaatggcactggaagaattcacggggtaatttttataca-acccgtg 62
Query: 61 atctcttagtggcatctatggtgcg 85
|||||||||||||||||||||||||
Sbjct: 63 atctcttagtggcatctatggtgcg 87
>37230_dsi-mir-263a:mirbase
Length = 90
Score = 113 bits (57), Expect = 2e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
|||||||||||||||||||||||||||||||||||||||| || || ||| |||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtaatttttataca-acccgtg 60
Query: 61 atctcttagtggcatctatggtgcg 85
|||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcg 85
>37519_dya-mir-263a:mirbase
Length = 90
Score = 113 bits (57), Expect = 2e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
|||||||||||||||||||||||||||||||||||||||| || || ||| |||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtactttttataca-acccgtg 60
Query: 61 atctcttagtggcatctatggtgcg 85
|||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcg 85
>36865_dpe-mir-263a:mirbase
Length = 89
Score = 111 bits (56), Expect = 9e-26
Identities = 79/84 (94%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 5 cggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtgatct 64
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 6 cggcacagttaatggcactggaagaattcacggggtttttcaat-aca-acccgtgatct 63
Query: 65 cttagtggcatctatggtgcggga 88
||||||||||||||||||||||||
Sbjct: 64 cttagtggcatctatggtgcggga 87
>36944_dps-mir-263a:mirbase
Length = 92
Score = 111 bits (56), Expect = 9e-26
Identities = 79/84 (94%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 5 cggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtgatct 64
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 7 cggcacagttaatggcactggaagaattcacggggtttttcaat-aca-acccgtgatct 64
Query: 65 cttagtggcatctatggtgcggga 88
||||||||||||||||||||||||
Sbjct: 65 cttagtggcatctatggtgcggga 88
>37105_dps-mir-3983:mirbase
Length = 88
Score = 111 bits (56), Expect = 9e-26
Identities = 79/84 (94%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 5 cggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtgatct 64
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 83 cggcacagttaatggcactggaagaattcacggggtttttcaat-aca-acccgtgatct 26
Query: 65 cttagtggcatctatggtgcggga 88
||||||||||||||||||||||||
Sbjct: 25 cttagtggcatctatggtgcggga 2
>36191_der-mir-263a:mirbase
Length = 90
Score = 105 bits (53), Expect = 5e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
|||||||||||||||||||||||||||||||||||||||| || | ||| |||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtacttttgataca-acccgtg 60
Query: 61 atctcttagtggcatctatggtgcg 85
|||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcg 85
>37151_dse-mir-263a:mirbase
Length = 90
Score = 105 bits (53), Expect = 5e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggtttttatttaacacacccgtg 60
|||||| ||||||||||||||||||||||||||||||||| || || ||| |||||||
Sbjct: 2 atctcgacacagttaatggcactggaagaattcacggggtaatttttataca-acccgtg 60
Query: 61 atctcttagtggcatctatggtgcg 85
|||||||||||||||||||||||||
Sbjct: 61 atctcttagtggcatctatggtgcg 85
>35297_aga-mir-263:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggggtttttatttaacacacccgtgatctcttagtggc 73
||||||||||||||||||||||||| ||||| || |||| |||||| ||||||||||||
Sbjct: 13 taatggcactggaagaattcacgggattttt-ttcaacattcccgtgttctcttagtggc 71
Query: 74 at 75
||
Sbjct: 72 at 73
>37761_tca-mir-263a:mirbase
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggtt 41
|||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggtt 44
>37762_tca-mir-263a:mirbase
Length = 91
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggtt 41
|||||||||||||||||||||||||||
Sbjct: 18 aatggcactggaagaattcacggggtt 44
>34978_isc-mir-263a:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggt 40
||||||||||||||||||||||||||
Sbjct: 21 aatggcactggaagaattcacggggt 46
>35202_aae-mir-263a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggg 38
|||||||||||||||||||||||||
Sbjct: 13 taatggcactggaagaattcacggg 37
>35377_ame-mir-263:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacgggg 39
|||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40
>36030_cqu-mir-263:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggg 38
|||||||||||||||||||||||||
Sbjct: 8 taatggcactggaagaattcacggg 32
>35019_dpu-mir-263a:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggg 38
||||||||||||||||||||||||
Sbjct: 20 aatggcactggaagaattcacggg 43
>35545_bmo-mir-263a:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggg 38
||||||||||||||||||||||||
Sbjct: 19 aatggcactggaagaattcacggg 42
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 cccgtgatctcttagtggcatc 76
||||||||||||||||||||||
Sbjct: 58 cccgtgatctcttagtggcatc 79
>35073_api-mir-263a:mirbase
Length = 66
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggt 40
|||||||||| |||||||||||||||
Sbjct: 1 aatggcactgaaagaattcacggggt 26
>38872_lgi-mir-183:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 acagttaatggcactggaagaattcacgg 37
||||| ||||||||||| |||||||||||
Sbjct: 15 acagtgaatggcactggtagaattcacgg 43
