miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36194_der-mir-275:mirbase
Length = 90
Score = 85.7 bits (43), Expect = 5e-18
Identities = 75/84 (89%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
||||| |||||||||||||||||||||||| |||||| | |||||| |||||||||
Sbjct: 3 gtctcctaccttgcgcgctaatcagtgaccggggctggtt--ttttat---atacagtca 57
Query: 61 ggtacctgaagtagcgcgcgtggt 84
||||||||||||||||||||||||
Sbjct: 58 ggtacctgaagtagcgcgcgtggt 81
>36411_dme-mir-275:mirbase
Length = 98
Score = 85.7 bits (43), Expect = 5e-18
Identities = 75/84 (89%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
||||| |||||||||||||||||||||||| |||||| | |||||| |||||||||
Sbjct: 7 gtctcctaccttgcgcgctaatcagtgaccggggctggtt--ttttat---atacagtca 61
Query: 61 ggtacctgaagtagcgcgcgtggt 84
||||||||||||||||||||||||
Sbjct: 62 ggtacctgaagtagcgcgcgtggt 85
>36412_dme-mir-275:mirbase
Length = 98
Score = 85.7 bits (43), Expect = 5e-18
Identities = 75/84 (89%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
||||| |||||||||||||||||||||||| |||||| | |||||| |||||||||
Sbjct: 7 gtctcctaccttgcgcgctaatcagtgaccggggctggtt--ttttat---atacagtca 61
Query: 61 ggtacctgaagtagcgcgcgtggt 84
||||||||||||||||||||||||
Sbjct: 62 ggtacctgaagtagcgcgcgtggt 85
>37232_dsi-mir-275:mirbase
Length = 90
Score = 85.7 bits (43), Expect = 5e-18
Identities = 75/84 (89%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
||||| |||||||||||||||||||||||| |||||| | |||||| |||||||||
Sbjct: 3 gtctcctaccttgcgcgctaatcagtgaccggggctggtt--ttttat---atacagtca 57
Query: 61 ggtacctgaagtagcgcgcgtggt 84
||||||||||||||||||||||||
Sbjct: 58 ggtacctgaagtagcgcgcgtggt 81
>37523_dya-mir-275:mirbase
Length = 90
Score = 85.7 bits (43), Expect = 5e-18
Identities = 75/84 (89%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
||||| |||||||||||||||||||||||| |||||| | |||||| |||||||||
Sbjct: 3 gtctcctaccttgcgcgctaatcagtgaccggggctggtt--ttttat---atacagtca 57
Query: 61 ggtacctgaagtagcgcgcgtggt 84
||||||||||||||||||||||||
Sbjct: 58 ggtacctgaagtagcgcgcgtggt 81
>37154_dse-mir-275:mirbase
Length = 90
Score = 77.8 bits (39), Expect = 1e-15
Identities = 74/84 (88%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
||||| |||||||||||||||||||||||| ||||| | |||||| |||||||||
Sbjct: 3 gtctcctaccttgcgcgctaatcagtgaccggggcttgtt--ttttat---atacagtca 57
Query: 61 ggtacctgaagtagcgcgcgtggt 84
||||||||||||||||||||||||
Sbjct: 58 ggtacctgaagtagcgcgcgtggt 81
>36116_dan-mir-275:mirbase
Length = 87
Score = 65.9 bits (33), Expect = 5e-12
Identities = 72/84 (85%), Gaps = 7/84 (8%)
Strand = Plus / Plus
Query: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
||||| |||||||||||||||||||||||| |||||| ||| | ||| ||||||
Sbjct: 2 gtctcctaccttgcgcgctaatcagtgaccggggctgg-----tttttgcaa--cagtca 54
Query: 61 ggtacctgaagtagcgcgcgtggt 84
||||||||||||||||||||||||
Sbjct: 55 ggtacctgaagtagcgcgcgtggt 78
>36868_dpe-mir-275:mirbase
Length = 89
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
||||| |||| |||||||||||||| |||| |||||| ||| |||| | ||||||
Sbjct: 3 gtctcctaccatgcgcgctaatcagagaccggggctgg-----ttttttcactgcagtca 57
Query: 61 ggtacctgaagtagcgcgcgtggt 84
||||||||||||||||||||||||
Sbjct: 58 ggtacctgaagtagcgcgcgtggt 81
>36947_dps-mir-275:mirbase
Length = 90
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
||||| |||| |||||||||||||| |||| |||||| ||| |||| | ||||||
Sbjct: 4 gtctcctaccatgcgcgctaatcagagaccggggctgg-----ttttttcactgcagtca 58
Query: 61 ggtacctgaagtagcgcgcgtggt 84
||||||||||||||||||||||||
Sbjct: 59 ggtacctgaagtagcgcgcgtggt 82
>36283_dgr-mir-275:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 54 acagtcaggtacctgaagtagcgcgcgtggt 84
|||||||||||||||||||||||||||||||
Sbjct: 52 acagtcaggtacctgaagtagcgcgcgtggt 82
>36791_dmo-mir-275:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 54 acagtcaggtacctgaagtagcgcgcgtggt 84
|||||||||||||||||||||||||||||||
Sbjct: 52 acagtcaggtacctgaagtagcgcgcgtggt 82
>37368_dvi-mir-275:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 54 acagtcaggtacctgaagtagcgcgcgtggt 84
|||||||||||||||||||||||||||||||
Sbjct: 52 acagtcaggtacctgaagtagcgcgcgtggt 82
>35204_aae-mir-275:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 cagtcaggtacctgaagtagcgcgcgtg 82
||||||||||||||||||||||||||||
Sbjct: 53 cagtcaggtacctgaagtagcgcgcgtg 80
>36031_cqu-mir-275:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 cagtcaggtacctgaagtagcgcgcgtg 82
||||||||||||||||||||||||||||
Sbjct: 59 cagtcaggtacctgaagtagcgcgcgtg 86
>35299_aga-mir-275:mirbase
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 cagtcaggtacctgaagtagcgcgcgt 81
|||||||||||||||||||||||||||
Sbjct: 58 cagtcaggtacctgaagtagcgcgcgt 84
>35379_ame-mir-275:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 cagtcaggtacctgaagtagcgcgcg 80
||||||||||||||||||||||||||
Sbjct: 64 cagtcaggtacctgaagtagcgcgcg 89
>34979_isc-mir-275:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 agtcaggtacctgaagtagcgcgcg 80
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35021_dpu-mir-275:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 agtcaggtacctgaagtagcgcgcg 80
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35548_bmo-mir-275:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 agtcaggtacctgaagtagcgcgcg 80
|||||||||||||||||||||||||
Sbjct: 49 agtcaggtacctgaagtagcgcgcg 73
>37586_ngi-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 agtcaggtacctgaagtagcgcgcg 80
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37617_nlo-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 agtcaggtacctgaagtagcgcgcg 80
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37659_nvi-mir-275:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 agtcaggtacctgaagtagcgcgcg 80
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>37765_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 agtcaggtacctgaagtagcgcgcg 80
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>37766_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 agtcaggtacctgaagtagcgcgcg 80
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>35075_api-mir-275:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 agtcaggtacctgaagtagcgcg 78
|||||||||||||||||||||||
Sbjct: 40 agtcaggtacctgaagtagcgcg 62
