miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36800_dmo-mir-282:mirbase
Length = 91
Score = 107 bits (54), Expect = 1e-24
Identities = 80/87 (91%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgcatttg-gat----tcagacata 57
||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 3 tccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagacata 62
Query: 58 gcctatgagaggttaggtgtaccaagg 84
||||||||||||||||||||| |||||
Sbjct: 63 gcctatgagaggttaggtgtagcaagg 89
>37377_dvi-mir-282:mirbase
Length = 94
Score = 107 bits (54), Expect = 1e-24
Identities = 80/87 (91%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgcatttg-gat----tcagacata 57
||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct: 5 tccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagacata 64
Query: 58 gcctatgagaggttaggtgtaccaagg 84
|||||||||||||||||||||||||||
Sbjct: 65 gcctatgagaggttaggtgtaccaagg 91
>36877_dpe-mir-282:mirbase
Length = 91
Score = 105 bits (53), Expect = 5e-24
Identities = 79/88 (89%), Gaps = 6/88 (6%)
Strand = Plus / Plus
Query: 4 ccttataaatctagcctctactaggctttgtctgtgcatttgga------ttcagacata 57
|||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
Query: 58 gcctatgagaggttaggtgtaccaagga 85
|||||| |||||||||||||||||||||
Sbjct: 63 gcctataagaggttaggtgtaccaagga 90
>36957_dps-mir-282:mirbase
Length = 94
Score = 105 bits (53), Expect = 5e-24
Identities = 79/88 (89%), Gaps = 6/88 (6%)
Strand = Plus / Plus
Query: 4 ccttataaatctagcctctactaggctttgtctgtgcatttgga------ttcagacata 57
|||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
Query: 58 gcctatgagaggttaggtgtaccaagga 85
|||||| |||||||||||||||||||||
Sbjct: 63 gcctataagaggttaggtgtaccaagga 90
>36125_dan-mir-282:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgcatttgga-----ttcagacata 57
|||||||| |||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 2 tccttatagatctagcctctactaggctttgtctgtgcattcgaaagtcgatcagacata 61
Query: 58 gcctatgagaggttaggtgtaccaagg 84
|||||| ||||||||||||||||||||
Sbjct: 62 gcctataagaggttaggtgtaccaagg 88
>36203_der-mir-282:mirbase
Length = 97
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgcatttgga-----ttcagacata 57
||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 5 tccttataaatctagcctctactaggctttgtctgtgcattcaaaagccgatcagacata 64
Query: 58 gcctatgagaggttaggtgtaccaagg 84
|||||| ||||||||||||||||||||
Sbjct: 65 gcctataagaggttaggtgtaccaagg 91
>36428_dme-mir-282:mirbase
Length = 97
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgcatttgga-----ttcagacata 57
||||| ||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 5 tccttctaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagacata 64
Query: 58 gcctatgagaggttaggtgtaccaagg 84
|||||| ||||||||||||||||||||
Sbjct: 65 gcctataagaggttaggtgtaccaagg 91
>36429_dme-mir-282:mirbase
Length = 97
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgcatttgga-----ttcagacata 57
||||| ||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 5 tccttctaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagacata 64
Query: 58 gcctatgagaggttaggtgtaccaagg 84
|||||| ||||||||||||||||||||
Sbjct: 65 gcctataagaggttaggtgtaccaagg 91
>37163_dse-mir-282:mirbase
Length = 97
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgcatttgga-----ttcagacata 57
||||| ||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 5 tccttttaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagacata 64
Query: 58 gcctatgagaggttaggtgtaccaagg 84
|||||| ||||||||||||||||||||
Sbjct: 65 gcctataagaggttaggtgtaccaagg 91
>37239_dsi-mir-282:mirbase
Length = 97
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgcatttgga-----ttcagacata 57
||||| ||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 5 tccttttaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagacata 64
Query: 58 gcctatgagaggttaggtgtaccaagg 84
|||||| ||||||||||||||||||||
Sbjct: 65 gcctataagaggttaggtgtaccaagg 91
>37532_dya-mir-282:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgcatttgga-----ttcagacata 57
|||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 2 tccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacata 61
Query: 58 gcctatgagaggttaggtgtaccaagg 84
|||||| ||||||||||||||||||||
Sbjct: 62 gcctataagaggttaggtgtaccaagg 88
>36292_dgr-mir-282:mirbase
Length = 94
Score = 89.7 bits (45), Expect = 3e-19
Identities = 75/84 (89%), Gaps = 7/84 (8%)
Strand = Plus / Plus
Query: 3 tccttataaatctagcctctactaggctttgtctgtgca---tttggat----tcagaca 55
||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct: 2 tccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagaca 61
Query: 56 tagcctatgagaggttaggtgtac 79
||||||||||||||||||||||||
Sbjct: 62 tagcctatgagaggttaggtgtac 85
>35211_aae-mir-282-1:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 aatctagcctctactaggctttgtctgt 38
|||||||||||| |||||||||||||||
Sbjct: 29 aatctagcctctcctaggctttgtctgt 56
>35212_aae-mir-282-2:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 aatctagcctctactaggctttgtctgt 38
|||||||||||| |||||||||||||||
Sbjct: 29 aatctagcctctcctaggctttgtctgt 56
>35306_aga-mir-282:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 aatctagcctctactaggctttgtctgt 38
|||||||||||| |||||||||||||||
Sbjct: 12 aatctagcctcttctaggctttgtctgt 39
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 50 cagacatagcctatgagaggttaggtg 76
|||||||||||| | ||||||||||||
Sbjct: 55 cagacatagcctgtcagaggttaggtg 81
>37783_tca-mir-282:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 15 tagcctctactaggctttgtctgtgcatttgg 46
|||||||| |||||||||||||||| ||||||
Sbjct: 9 tagcctctcctaggctttgtctgtgaatttgg 40
>37784_tca-mir-282:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 15 tagcctctactaggctttgtctgtgcatttgg 46
|||||||| |||||||||||||||| ||||||
Sbjct: 9 tagcctctcctaggctttgtctgtgaatttgg 40
>35387_ame-mir-282:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tagcctctactaggctttgtctgt 38
|||||||| |||||||||||||||
Sbjct: 19 tagcctctcctaggctttgtctgt 42
>37621_nlo-mir-282:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tagcctctactaggctttgtctgt 38
|||||||| |||||||||||||||
Sbjct: 6 tagcctctcctaggctttgtctgt 29
>37664_nvi-mir-282:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tagcctctactaggctttgtctgt 38
|||||||| |||||||||||||||
Sbjct: 19 tagcctctcctaggctttgtctgt 42
