miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36130_dan-mir-287:mirbase
Length = 73
Score = 109 bits (55), Expect = 3e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 13 gtctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 11 gtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||||||||||||||||||
Sbjct: 51 acacatttacaattattgtaaatgtgt 25
>36438_dme-mir-287:mirbase
Length = 93
Score = 105 bits (53), Expect = 4e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 13 gtctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcac 69
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 29 gtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 85
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||||||||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>36881_dpe-mir-287:mirbase
Length = 75
Score = 105 bits (53), Expect = 4e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 15 ctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 74
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||||||||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36962_dps-mir-287:mirbase
Length = 80
Score = 105 bits (53), Expect = 4e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 15 ctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 74
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||||||||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36208_der-mir-287:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 14 tctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcac 69
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 tctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 82
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||||||||||||||||||
Sbjct: 66 acacatttacaattattgtaaatgtgt 40
>36805_dmo-mir-287:mirbase
Length = 62
Score = 103 bits (52), Expect = 2e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 16 tgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 62
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||||||||||||||||||
Sbjct: 44 acacatttacaattattgtaaatgtgt 18
>37382_dvi-mir-287:mirbase
Length = 68
Score = 103 bits (52), Expect = 2e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 16 tgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||||||||||||||||||
Sbjct: 50 acacatttacaattattgtaaatgtgt 24
>37168_dse-mir-287:mirbase
Length = 71
Score = 97.6 bits (49), Expect = 1e-21
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 17 gaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcac 69
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 63
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||||||||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>37244_dsi-mir-287:mirbase
Length = 71
Score = 97.6 bits (49), Expect = 1e-21
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 17 gaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcac 69
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 63
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||||||||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>36298_dgr-mir-287-1:mirbase
Length = 73
Score = 95.6 bits (48), Expect = 4e-21
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 16 tgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaa 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||| ||||||||||||||
Sbjct: 49 acacatttacaaatattgtaaatgtgt 23
>36299_dgr-mir-287-2:mirbase
Length = 73
Score = 95.6 bits (48), Expect = 4e-21
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 16 tgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 71
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaa 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
|||||||||||| ||||||||||||||
Sbjct: 49 acacatttacaaatattgtaaatgtgt 23
>37537_dya-mir-287:mirbase
Length = 77
Score = 95.6 bits (48), Expect = 4e-21
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 13 gtctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgca 68
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 13 gtctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgca 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 27 acacatttacaattattgtaaatgtgt 53
||||||||||||||| |||||||||||
Sbjct: 53 acacatttacaattactgtaaatgtgt 27
