miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36131_dan-mir-288:mirbase
Length = 92
Score = 131 bits (66), Expect = 1e-31
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 4 gtcgtaattagcagcgcacaacattcgtcggcgataattaatgacgttggtcacgttggt 63
|||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct: 4 gtcgtaattagcagggcacagaatt-gccggcgataattaatgacgttggtcacgttggt 62
Query: 64 ttcatgtcgatttcatttcatgacacggcc 93
||||||||||||||||||||||||||||||
Sbjct: 63 ttcatgtcgatttcatttcatgacacggcc 92
>36963_dps-mir-288:mirbase
Length = 96
Score = 125 bits (63), Expect = 6e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 93
Query: 92 ccg 94
|||
Sbjct: 94 ccg 96
>36300_dgr-mir-288:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 33 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 94
Query: 93 cg 94
||
Sbjct: 95 cg 96
>36806_dmo-mir-288:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 33 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 94
Query: 93 cg 94
||
Sbjct: 95 cg 96
>36439_dme-mir-288:mirbase
Length = 97
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacgg 94
Query: 92 ccg 94
|||
Sbjct: 95 ccg 97
>36882_dpe-mir-288:mirbase
Length = 96
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 cggcgaaaattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 93
Query: 92 ccg 94
|||
Sbjct: 94 ccg 96
>37169_dse-mir-288:mirbase
Length = 97
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacgg 94
Query: 92 ccg 94
|||
Sbjct: 95 ccg 97
>37245_dsi-mir-288:mirbase
Length = 97
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacgg 94
Query: 92 ccg 94
|||
Sbjct: 95 ccg 97
>37383_dvi-mir-288:mirbase
Length = 97
Score = 117 bits (59), Expect = 1e-27
Identities = 84/91 (92%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 4 gtcgtaattagcagcgcacaacattcgtcggcgataattaatgacgttggtcacgttggt 63
|||||||||||| | ||||||| || | |||||||||||||||| ||||||||||||||
Sbjct: 8 gtcgtaattagctgtgcacaacgttgct-ggcgataattaatgactttggtcacgttggt 66
Query: 64 ttcatgtcgatttcatttcatgacacggccg 94
|||||||||||||||||||||||||||||||
Sbjct: 67 ttcatgtcgatttcatttcatgacacggccg 97
>37538_dya-mir-288:mirbase
Length = 96
Score = 115 bits (58), Expect = 6e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacgg 94
Query: 92 cc 93
||
Sbjct: 95 cc 96
>36209_der-mir-288:mirbase
Length = 97
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcaggacacgg 94
Query: 92 ccg 94
|||
Sbjct: 95 ccg 97
