miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37384_dvi-mir-304:mirbase
Length = 89
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||||||||||||||||||||||||||||||||| || ||| || |||||||||||
Sbjct: 5 cattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactcacttt 64
Query: 65 gcaattggagattgctcgagattgc 89
|||||||||||||||||||||||||
Sbjct: 65 gcaattggagattgctcgagattgc 89
>36807_dmo-mir-304:mirbase
Length = 89
Score = 113 bits (57), Expect = 2e-26
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||||||||||||||||||||||||||||||||| | | ||| || |||||||||||
Sbjct: 5 cattgattaatctcaatttgtaaatgtgagcgatttttaactatttgacgcactcacttt 64
Query: 65 gcaattggagattgctcgaga 85
|||||||||||||||||||||
Sbjct: 65 gcaattggagattgctcgaga 85
>36443_dme-mir-304:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 5 cattgaataatctcaatttgtaaatgtgagcggtttaag-ccatttgacgcactcacttt 63
Query: 65 gcaattggagattgctcgaga 85
|||||||||||||||||||||
Sbjct: 64 gcaattggagattgctcgaga 84
>36444_dme-mir-304:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 5 cattgaataatctcaatttgtaaatgtgagcggtttaag-ccatttgacgcactcacttt 63
Query: 65 gcaattggagattgctcgaga 85
|||||||||||||||||||||
Sbjct: 64 gcaattggagattgctcgaga 84
>36211_der-mir-304:mirbase
Length = 88
Score = 97.6 bits (49), Expect = 1e-21
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||| ||||||||||||||||||||||||| ||| | ||||| || |||||||||||
Sbjct: 5 cattgaataatctcaatttgtaaatgtgagcggtttgag-ccatttgacgcactcacttt 63
Query: 65 gcaattggagattgctcgaga 85
|||||||||||||||||||||
Sbjct: 64 gcaattggagattgctcgaga 84
>36301_dgr-mir-304:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||| |||||||||||||||||||||||||||| | ||| || |||||||||||
Sbjct: 5 cattgaataatctcaatttgtaaatgtgagcgattattaagaatttgacgcactcacttt 64
Query: 65 gcaattggagattgctcgagattgc 89
|||||||||||||||||||||||||
Sbjct: 65 gcaattggagattgctcgagattgc 89
>37171_dse-mir-304:mirbase
Length = 88
Score = 97.6 bits (49), Expect = 1e-21
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||| ||||||||||||||||||||||||| ||| | ||||| || |||||||||||
Sbjct: 5 cattgaataatctcaatttgtaaatgtgagcggtttgag-ccatttgacgcactcacttt 63
Query: 65 gcaattggagattgctcgaga 85
|||||||||||||||||||||
Sbjct: 64 gcaattggagattgctcgaga 84
>37248_dsi-mir-304:mirbase
Length = 88
Score = 97.6 bits (49), Expect = 1e-21
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||| ||||||||||||||||||||||||| ||| | ||||| || |||||||||||
Sbjct: 5 cattgaataatctcaatttgtaaatgtgagcggtttgag-ccatttgacgcactcacttt 63
Query: 65 gcaattggagattgctcgaga 85
|||||||||||||||||||||
Sbjct: 64 gcaattggagattgctcgaga 84
>37540_dya-mir-304:mirbase
Length = 88
Score = 97.6 bits (49), Expect = 1e-21
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||| ||||||||||||||||||||||||| ||| | ||||| || |||||||||||
Sbjct: 5 cattgaataatctcaatttgtaaatgtgagcggtttgag-ccatttgacgcactcacttt 63
Query: 65 gcaattggagattgctcgaga 85
|||||||||||||||||||||
Sbjct: 64 gcaattggagattgctcgaga 84
>36133_dan-mir-304:mirbase
Length = 88
Score = 89.7 bits (45), Expect = 3e-19
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||| ||||||||||||||||||||||||||||| | ||||| || | |||||||||
Sbjct: 5 cattgaataatctcaatttgtaaatgtgagcgattt-gagccatttgacggactcacttt 63
Query: 65 gcaattggagattgctcgaga 85
|||| ||||||||||||||||
Sbjct: 64 gcaactggagattgctcgaga 84
>36965_dps-mir-304:mirbase
Length = 88
Score = 77.8 bits (39), Expect = 1e-15
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
|||||| ||||||||||||||||||||||||||||| | |||| || ||||||||||
Sbjct: 5 cattgaataatctcaatttgtaaatgtgagcgattt-gaggcatttgacacactcacttt 63
Query: 65 gcaattggagattgctcga 83
|||| ||||||||||||||
Sbjct: 64 gcaactggagattgctcga 82
