miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36134_dan-mir-305:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgtttgtaacccggcacatgttgaa 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgtcc-accgtaacccggcacatgttgaa 59
Query: 61 gtacactcaatatg 74
||||||||||||||
Sbjct: 60 gtacactcaatatg 73
>36212_der-mir-305:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgtttgtaacccggcacatgttgaa 60
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgt-ggtccgtaacccggcacatgttgaa 59
Query: 61 gtacactcaatatg 74
||||||||||||||
Sbjct: 60 gtacactcaatatg 73
>36302_dgr-mir-305:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgtttgtaacccggcacatgttgaa 60
|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgt-cactcgtaacccggcacatgttgaa 59
Query: 61 gtacactcaatatg 74
||||||||||||||
Sbjct: 60 gtacactcaatatg 73
>36808_dmo-mir-305:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgtttgtaacccggcacatgttgaa 60
||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgtcag-tggaaacccggcacatgttgaa 59
Query: 61 gtacactcaatatg 74
||||||||||||||
Sbjct: 60 gtacactcaatatg 73
>37385_dvi-mir-305:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgtttgtaacccggcacatgttgaa 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgt-gacttgtaacccggcacatgttgaa 59
Query: 61 gtacactcaatatg 74
||||||||||||||
Sbjct: 60 gtacactcaatatg 73
>36445_dme-mir-305:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 71/75 (94%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgt-ttgtaacccggcacatgttga 59
|||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgt--gtctcgtaacccggcacatgttga 58
Query: 60 agtacactcaatatg 74
|||||||||||||||
Sbjct: 59 agtacactcaatatg 73
>36446_dme-mir-305:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 71/75 (94%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgt-ttgtaacccggcacatgttga 59
|||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgt--gtctcgtaacccggcacatgttga 58
Query: 60 agtacactcaatatg 74
|||||||||||||||
Sbjct: 59 agtacactcaatatg 73
>36884_dpe-mir-305:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 71/75 (94%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgtt-tgtaacccggcacatgttga 59
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgt--gtcctgtaacccggcacatgttga 58
Query: 60 agtacactcaatatg 74
|||||||||||||||
Sbjct: 59 agtacactcaatatg 73
>36966_dps-mir-305:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 71/75 (94%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgtt-tgtaacccggcacatgttga 59
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgt--gtcctgtaacccggcacatgttga 58
Query: 60 agtacactcaatatg 74
|||||||||||||||
Sbjct: 59 agtacactcaatatg 73
>37172_dse-mir-305:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 71/75 (94%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgt-ttgtaacccggcacatgttga 59
|||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgt--gtctcgtaacccggcacatgttga 58
Query: 60 agtacactcaatatg 74
|||||||||||||||
Sbjct: 59 agtacactcaatatg 73
>37541_dya-mir-305:mirbase
Length = 73
Score = 99.6 bits (50), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgtttgtaacccggcacatgttgaa 60
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggtgt-ggcccgtaacccggcacatgttgaa 59
Query: 61 gtacactcaatatg 74
||||||||||||||
Sbjct: 60 gtacactcaatatg 73
>37249_dsi-mir-305:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 69/75 (92%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgttt-gtaacccggcacatgttga 59
|||||||||||||||||||||| ||||||||||| || | ||||||||||||||| |||
Sbjct: 1 catgtctattgtacttcatcag-tgctctggtgt--gtctcgtaacccggcacatgctga 57
Query: 60 agtacactcaatatg 74
|||||||||||||||
Sbjct: 58 agtacactcaatatg 72
>36041_cqu-mir-305:mirbase
Length = 88
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtgtccgtttgtaacccggcacatgttgaa 60
|||||||||||||||||||||||||||||||| | | || | ||||||||||||||| |
Sbjct: 8 catgtctattgtacttcatcaggtgctctggt-tgctttcgatacccggcacatgttgga 66
Query: 61 gtacact 67
|||||||
Sbjct: 67 gtacact 73
>35309_aga-mir-305:mirbase
Length = 90
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggtg 33
|||||||||||||||||||||||||||||||||
Sbjct: 8 catgtctattgtacttcatcaggtgctctggtg 40
>35218_aae-mir-305:mirbase
Length = 88
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggt 32
||||||||||||||||||||||||||||||||
Sbjct: 8 catgtctattgtacttcatcaggtgctctggt 39
>37788_tca-mir-305:mirbase
Length = 75
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggt 32
||||||||||||||||||||||||||||||||
Sbjct: 3 catgtctattgtacttcatcaggtgctctggt 34
>37789_tca-mir-305:mirbase
Length = 75
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 catgtctattgtacttcatcaggtgctctggt 32
||||||||||||||||||||||||||||||||
Sbjct: 3 catgtctattgtacttcatcaggtgctctggt 34
>35389_ame-mir-305:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 attgtacttcatcaggtgctctggtg 33
||||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggtg 41
>35561_bmo-mir-305:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 attgtacttcatcaggtgctctggtg 33
||||||||||||||||||||||||||
Sbjct: 17 attgtacttcatcaggtgctctggtg 42
>37591_ngi-mir-305:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 attgtacttcatcaggtgctctggtg 33
||||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggtg 41
>37622_nlo-mir-305:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 attgtacttcatcaggtgctctggtg 33
||||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggtg 41
>37666_nvi-mir-305:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 attgtacttcatcaggtgctctggtg 33
||||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggtg 41
>34984_isc-mir-305:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 attgtacttcatcaggtgctctgg 31
||||||||||||||||||||||||
Sbjct: 14 attgtacttcatcaggtgctctgg 37
