miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36886_dpe-mir-307:mirbase
Length = 88
Score = 137 bits (69), Expect = 1e-33
Identities = 82/85 (96%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcaggat 87
|||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcaggat 87
>36968_dps-mir-307a:mirbase
Length = 88
Score = 137 bits (69), Expect = 1e-33
Identities = 82/85 (96%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcaggat 87
|||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcaggat 87
>36136_dan-mir-307:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcagga 86
||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcagga 86
>36214_der-mir-307:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcagga 86
||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcagga 86
>36449_dme-mir-307a:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcagga 86
||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcagga 86
>36450_dme-mir-307a:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcagga 86
||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcagga 86
>36451_dme-mir-307b:mirbase
Length = 120
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 102 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 44
Query: 63 ctccttgagtgagcgatagcagga 86
||||||||||||||||||||||||
Sbjct: 43 ctccttgagtgagcgatagcagga 20
>36452_dme-mir-307b:mirbase
Length = 120
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 102 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 44
Query: 63 ctccttgagtgagcgatagcagga 86
||||||||||||||||||||||||
Sbjct: 43 ctccttgagtgagcgatagcagga 20
>36969_dps-mir-307b:mirbase
Length = 85
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 83 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 25
Query: 63 ctccttgagtgagcgatagcagga 86
||||||||||||||||||||||||
Sbjct: 24 ctccttgagtgagcgatagcagga 1
>37174_dse-mir-307:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcagga 86
||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcagga 86
>37250_dsi-mir-307:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcagga 86
||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcagga 86
>37543_dya-mir-307:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 81/84 (96%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcga-tatggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcagga 86
||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcagga 86
>36304_dgr-mir-307:mirbase
Length = 88
Score = 129 bits (65), Expect = 4e-31
Identities = 81/85 (95%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcgatt-tggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcaggat 87
|||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcaggat 87
>36810_dmo-mir-307:mirbase
Length = 88
Score = 121 bits (61), Expect = 9e-29
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttatttcgattc-ggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcaggat 87
|||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcaggat 87
>37387_dvi-mir-307:mirbase
Length = 88
Score = 121 bits (61), Expect = 9e-29
Identities = 80/85 (94%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 3 cttgctttgactcactcaacctgggtgtgatgttatttataatatggtatccatcacaac 62
||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||
Sbjct: 4 cttgctttgactcactcaacctgggtgtgatgttagttcgatt-tggtatccatcacaac 62
Query: 63 ctccttgagtgagcgatagcaggat 87
|||||||||||||||||||||||||
Sbjct: 63 ctccttgagtgagcgatagcaggat 87
>35564_bmo-mir-307:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 ccatcacaacctccttgagtgagcgat 79
|||||||||||||||||||||||||||
Sbjct: 58 ccatcacaacctccttgagtgagcgat 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 actcactcaacctgggtgtgatgt 35
||||||||||||||||||||||||
Sbjct: 16 actcactcaacctgggtgtgatgt 39
>37790_tca-mir-307:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 tgactcactcaacctgggtgtgatgt 35
||||||||||||||||||||||||||
Sbjct: 3 tgactcactcaacctgggtgtgatgt 28
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 ccatcacaacctccttgagtgagcga 78
||||||||||||||||||||||||||
Sbjct: 39 ccatcacaacctccttgagtgagcga 64
>37791_tca-mir-307:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 tgactcactcaacctgggtgtgatgt 35
||||||||||||||||||||||||||
Sbjct: 3 tgactcactcaacctgggtgtgatgt 28
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 ccatcacaacctccttgagtgagcga 78
||||||||||||||||||||||||||
Sbjct: 39 ccatcacaacctccttgagtgagcga 64
>35220_aae-mir-307:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 catcacaacctccttgagtgagcga 78
|||||||||||||||||||||||||
Sbjct: 56 catcacaacctccttgagtgagcga 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 actcactcaacctgggtgtgatg 34
|||||||||||||||||||||||
Sbjct: 22 actcactcaacctgggtgtgatg 44
>35311_aga-mir-307:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 catcacaacctccttgagtgagcga 78
|||||||||||||||||||||||||
Sbjct: 54 catcacaacctccttgagtgagcga 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 actcactcaacctgggtgtgatg 34
|||||||||||||||||||||||
Sbjct: 20 actcactcaacctgggtgtgatg 42
>35391_ame-mir-307:mirbase
Length = 133
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 gactcactcaacctgggtgtgatg 34
||||||||||||||||||||||||
Sbjct: 31 gactcactcaacctgggtgtgatg 54
>37567_lmi-mir-307:mirbase
Length = 61
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 actcactcaacctgggtgtgatgt 35
||||||||||||||||||||||||
Sbjct: 1 actcactcaacctgggtgtgatgt 24
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tcacaacctccttgagtgagcga 78
|||||||||||||||||||||||
Sbjct: 39 tcacaacctccttgagtgagcga 61
>34985_isc-mir-307:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 ccatcacaacctccttgagtgag 75
|||||||||||||||||||||||
Sbjct: 58 ccatcacaacctccttgagtgag 80
>37667_nvi-mir-307:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 actcactcaacctgggtgtgatg 34
|||||||||||||||||||||||
Sbjct: 20 actcactcaacctgggtgtgatg 42
>35083_api-mir-307-1:mirbase
Length = 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 cacaacctccttgagtgagcga 78
||||||||||||||||||||||
Sbjct: 40 cacaacctccttgagtgagcga 61
>35084_api-mir-307-2:mirbase
Length = 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 cacaacctccttgagtgagcga 78
||||||||||||||||||||||
Sbjct: 40 cacaacctccttgagtgagcga 61
>35030_dpu-mir-307:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tcacaacctccttgagtgag 75
||||||||||||||||||||
Sbjct: 61 tcacaacctccttgagtgag 80
