miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36145_dan-mir-316:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttaattcaaacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36891_dpe-mir-316:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgttttattcgatcaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36975_dps-mir-316:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgttttattcgatcaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>37553_dya-mir-316-1:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>37554_dya-mir-316-2:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36227_der-mir-316:mirbase
Length = 89
Score = 137 bits (69), Expect = 1e-33
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
||||||||||||||||| |||||||||||
Sbjct: 61 agggaaaaaggcgtattcactatgagttt 89
>37183_dse-mir-316:mirbase
Length = 89
Score = 137 bits (69), Expect = 1e-33
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>37259_dsi-mir-316:mirbase
Length = 89
Score = 137 bits (69), Expect = 1e-33
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36310_dgr-mir-316:mirbase
Length = 87
Score = 131 bits (66), Expect = 9e-32
Identities = 79/82 (96%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaaagg 63
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 3 ttctagtcgatttgtctttttccgcttactggcgttttattgagc-aacgacaggaaagg 61
Query: 64 gaaaaaggcgtatttactatga 85
||||||||||||||||||||||
Sbjct: 62 gaaaaaggcgtatttactatga 83
>37395_dvi-mir-316:mirbase
Length = 88
Score = 131 bits (66), Expect = 9e-32
Identities = 79/82 (96%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaaagg 63
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgttttattgagc-aacgacaggaaagg 62
Query: 64 gaaaaaggcgtatttactatga 85
||||||||||||||||||||||
Sbjct: 63 gaaaaaggcgtatttactatga 84
>36469_dme-mir-316:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36470_dme-mir-316:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36816_dmo-mir-316:mirbase
Length = 87
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaaagg 63
||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactgacgttttattgaac-aacggcagggaagg 62
Query: 64 gaaaaaggcgtatttactatga 85
||||||||||||||||||||||
Sbjct: 63 gaaaaaggcgtatttactatga 84
>35226_aae-mir-316:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gatttgtctttttccgcttactg 34
|||||||||||||||||||||||
Sbjct: 15 gatttgtctttttccgcttactg 37
>36046_cqu-mir-316:mirbase
Length = 139
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gatttgtctttttccgcttactg 34
|||||||||||||||||||||||
Sbjct: 32 gatttgtctttttccgcttactg 54
