miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36892_dpe-mir-317-1:mirbase
Length = 90
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 2 gcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaacac 61
Query: 61 agctggtggtatccagtggccgtt 84
||||||||||||||| ||||||||
Sbjct: 62 agctggtggtatccaatggccgtt 85
>36893_dpe-mir-317-2:mirbase
Length = 90
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 2 gcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaacac 61
Query: 61 agctggtggtatccagtggccgtt 84
||||||||||||||| ||||||||
Sbjct: 62 agctggtggtatccaatggccgtt 85
>36976_dps-mir-317:mirbase
Length = 90
Score = 127 bits (64), Expect = 1e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 2 gcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaacac 61
Query: 61 agctggtggtatccagtggccgtt 84
||||||||||||||| ||||||||
Sbjct: 62 agctggtggtatccaatggccgtt 85
>36228_der-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 8e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
|||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 3 gcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacac 62
Query: 61 agctggtggtatccagtggccgttt 85
|||||||||||||||||||||||||
Sbjct: 63 agctggtggtatccagtggccgttt 87
>36471_dme-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 8e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
|||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 3 gcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacac 62
Query: 61 agctggtggtatccagtggccgttt 85
|||||||||||||||||||||||||
Sbjct: 63 agctggtggtatccagtggccgttt 87
>36472_dme-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 8e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
|||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 3 gcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacac 62
Query: 61 agctggtggtatccagtggccgttt 85
|||||||||||||||||||||||||
Sbjct: 63 agctggtggtatccagtggccgttt 87
>37184_dse-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 8e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
|||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 3 gcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacac 62
Query: 61 agctggtggtatccagtggccgttt 85
|||||||||||||||||||||||||
Sbjct: 63 agctggtggtatccagtggccgttt 87
>37260_dsi-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 8e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
|||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 3 gcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacac 62
Query: 61 agctggtggtatccagtggccgttt 85
|||||||||||||||||||||||||
Sbjct: 63 agctggtggtatccagtggccgttt 87
>37396_dvi-mir-317:mirbase
Length = 86
Score = 121 bits (61), Expect = 8e-29
Identities = 79/84 (94%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
|||| |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 2 gcaattgccgctgggatacaccctgtgctcgctttgaat--tgtgcaagcaagtgaacac 59
Query: 61 agctggtggtatccagtggccgtt 84
||||||||||||||||||||||||
Sbjct: 60 agctggtggtatccagtggccgtt 83
>37555_dya-mir-317:mirbase
Length = 92
Score = 121 bits (61), Expect = 8e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
|||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 3 gcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacac 62
Query: 61 agctggtggtatccagtggccgttt 85
|||||||||||||||||||||||||
Sbjct: 63 agctggtggtatccagtggccgttt 87
>36311_dgr-mir-317:mirbase
Length = 90
Score = 115 bits (58), Expect = 5e-27
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggataca-ccctgtgctcgctttgaatattgtgcaaacaagtgaaca 59
|||| ||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct: 2 gcaattgccactgggatattgccctgtgctcgctttgaatattgtgtaagcaagtgaaca 61
Query: 60 cagctggtggtatccagtggccgttt 85
||||||||||||||||||||||||||
Sbjct: 62 cagctggtggtatccagtggccgttt 87
>36146_dan-mir-317:mirbase
Length = 91
Score = 109 bits (55), Expect = 3e-25
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 11 ctgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacacagctggtggt 70
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 12 ctgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggt 71
Query: 71 atccagtggccgttt 85
|||||||||||||||
Sbjct: 72 atccagtggccgttt 86
>36817_dmo-mir-317:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 74/84 (88%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 gcaactgccactgggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacac 60
|||| |||| ||||||||||||||||||||||||||| | || || |||||||||||
Sbjct: 2 gcaattgccgctgggatacaccctgtgctcgctttgagt-ttatgttg-caagtgaacac 59
Query: 61 agctggtggtatccagtggccgtt 84
|||||||||||||||| |||||||
Sbjct: 60 agctggtggtatccagaggccgtt 83
>35315_aga-mir-317:mirbase
Length = 90
Score = 63.9 bits (32), Expect = 2e-11
Identities = 70/80 (87%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 5 ctgccactgggatacaccctgtgctcgctttgaatattg-tgcaaacaagtgaacacagc 63
||||||||||||||| || |||||||||| || |||| | | ||||| |||||||||| |
Sbjct: 6 ctgccactgggatactccttgtgctcgctgtgcatatcgattcaaactagtgaacacatc 65
Query: 64 tggtggtatc-cagtggccg 82
|||||||||| |||||||||
Sbjct: 66 tggtggtatctcagtggccg 85
>35227_aae-mir-317-1:mirbase
Length = 92
Score = 58.0 bits (29), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 13 gggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacacagctggtggtat 72
|||||||||||||||||||||||| || | |||| |||||||||||||||||||||
Sbjct: 18 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 73
Query: 73 c-cagtggcc 81
| ||||||||
Sbjct: 74 ctcagtggcc 83
>35228_aae-mir-317-2:mirbase
Length = 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 13 gggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacacagctggtggtat 72
|||||||||||||||||||||||| || | |||| |||||||||||||||||||||
Sbjct: 16 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 71
Query: 73 c-cagtggcc 81
| ||||||||
Sbjct: 72 ctcagtggcc 81
>36047_cqu-mir-317:mirbase
Length = 92
Score = 58.0 bits (29), Expect = 1e-09
Identities = 61/70 (87%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 13 gggatacaccctgtgctcgctttgaatattgtgcaaacaagtgaacacagctggtggtat 72
|||||||||||||||||||||||| || | |||| |||||||||||||||||||||
Sbjct: 18 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 73
Query: 73 c-cagtggcc 81
| ||||||||
Sbjct: 74 ctcagtggcc 83
>35087_api-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 agtgaacacagctggtggtatc 73
||||||||||||||||||||||
Sbjct: 55 agtgaacacagctggtggtatc 76
>35567_bmo-mir-317:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 agtgaacacagctggtggtatc 73
||||||||||||||||||||||
Sbjct: 53 agtgaacacagctggtggtatc 74
>37801_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 agtgaacacagctggtggtatc 73
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>37802_tca-mir-317:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 agtgaacacagctggtggtatc 73
||||||||||||||||||||||
Sbjct: 44 agtgaacacagctggtggtatc 65
>38886_lgi-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 gtgaacacagctggtggtatc 73
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>38776_cte-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 gtgaacacagctggtggtatc 73
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35032_dpu-mir-317:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 gtgaacacagctggtggtatc 73
|||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtatc 80
>35394_ame-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 gtgaacacagctggtggtatc 73
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>37592_ngi-mir-317:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 gtgaacacagctggtggtatc 73
|||||||||||||||||||||
Sbjct: 51 gtgaacacagctggtggtatc 71
>37669_nvi-mir-317:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 gtgaacacagctggtggtatc 73
|||||||||||||||||||||
Sbjct: 54 gtgaacacagctggtggtatc 74
>34987_isc-mir-317:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 gtgaacacagctggtggtat 72
||||||||||||||||||||
Sbjct: 60 gtgaacacagctggtggtat 79
