miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36160_der-mir-5:mirbase
Length = 64
Score = 119 bits (60), Expect = 2e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgttattccctaacatatcacagtgattttccttt 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgttgttccctaacatatcacagtgattttccttt 60
Query: 61 ataa 64
||||
Sbjct: 61 ataa 64
>36335_dme-mir-5:mirbase
Length = 69
Score = 103 bits (52), Expect = 1e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgttattccctaacatatcacagtgattttccttt 60
||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
Query: 61 ataa 64
||||
Sbjct: 63 ataa 66
>36336_dme-mir-5:mirbase
Length = 69
Score = 103 bits (52), Expect = 1e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgttattccctaacatatcacagtgattttccttt 60
||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
Query: 61 ataa 64
||||
Sbjct: 63 ataa 66
>37120_dse-mir-5:mirbase
Length = 64
Score = 103 bits (52), Expect = 1e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgttattccctaacatatcacagtgattttccttt 60
||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgagttgttcccgaacatatcacagtgattttccttt 60
Query: 61 ataa 64
||||
Sbjct: 61 ataa 64
>37198_dsi-mir-5:mirbase
Length = 63
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgttattccctaacatatcacagtgattttccttt 60
||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgagttgttccc-aacatatcacagtgattttccttt 59
Query: 61 ata 63
|||
Sbjct: 60 ata 62
>36082_dan-mir-5:mirbase
Length = 67
Score = 81.8 bits (41), Expect = 5e-17
Identities = 61/67 (91%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgttattccc---taacatatcacagtgattttcc 57
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtttatccctcgttacatatcacagtgattttcc 60
Query: 58 tttataa 64
|||||||
Sbjct: 61 tttataa 67
>36758_dmo-mir-5:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgttatt---ccctaacatatcacagtgattttcc 57
|||||||||||||||||||||||||||||| | || | ||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgcgttaatcgaccgttacatatcacagtgattttcc 62
Query: 58 tttata 63
||||||
Sbjct: 63 tttata 68
>36831_dpe-mir-5:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgttatt---ccctaacatatcacagtgattttcc 57
|||||||||||||||||||||||||||||| | || | ||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttcc 62
Query: 58 tttata 63
||||||
Sbjct: 63 tttata 68
>36907_dps-mir-5:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgttatt---ccctaacatatcacagtgattttcc 57
|||||||||||||||||||||||||||||| | || | ||||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgattttcc 62
Query: 58 tttata 63
||||||
Sbjct: 63 tttata 68
>37334_dvi-mir-5:mirbase
Length = 70
Score = 77.8 bits (39), Expect = 8e-16
Identities = 61/66 (92%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgtt-att--ccctaacatatcacagtgattttcc 57
||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||||
Sbjct: 2 taaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttcc 61
Query: 58 tttata 63
||||||
Sbjct: 62 tttata 67
>36244_dgr-mir-5-1:mirbase
Length = 73
Score = 65.9 bits (33), Expect = 3e-12
Identities = 60/67 (89%), Gaps = 4/67 (5%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgtt-att---ccctaacatatcacagtgattttc 56
||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattttc 62
Query: 57 ctttata 63
|||||||
Sbjct: 63 ctttata 69
>36245_dgr-mir-5-2:mirbase
Length = 73
Score = 65.9 bits (33), Expect = 3e-12
Identities = 60/67 (89%), Gaps = 4/67 (5%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgtt-att---ccctaacatatcacagtgattttc 56
||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattttc 62
Query: 57 ctttata 63
|||||||
Sbjct: 63 ctttata 69
>37409_dwi-mir-5:mirbase
Length = 73
Score = 65.9 bits (33), Expect = 3e-12
Identities = 60/67 (89%), Gaps = 4/67 (5%)
Strand = Plus / Plus
Query: 1 taaaaggaacgatcgttgtgatatgcgtt--att--ccctaacatatcacagtgattttc 56
||||||||||||||||||||||||||||| ||| || | | |||||||||||||||||
Sbjct: 3 taaaaggaacgatcgttgtgatatgcgttagattcaccgttatatatcacagtgattttc 62
Query: 57 ctttata 63
|||||||
Sbjct: 63 ctttata 69
