miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36165_der-mir-8:mirbase
          Length = 87

 Score =  172 bits (87), Expect = 3e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60

                                     
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
          |||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87




>36345_dme-mir-8:mirbase
          Length = 87

 Score =  172 bits (87), Expect = 3e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60

                                     
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
          |||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87




>36346_dme-mir-8:mirbase
          Length = 87

 Score =  172 bits (87), Expect = 3e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60

                                     
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
          |||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87




>37203_dsi-mir-8:mirbase
          Length = 87

 Score =  172 bits (87), Expect = 3e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60

                                     
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
          |||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87




>37125_dse-mir-8:mirbase
          Length = 87

 Score =  165 bits (83), Expect = 6e-42
 Identities = 86/87 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
          |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttaaaactctaatactg 60

                                     
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
          |||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87




>36087_dan-mir-8:mirbase
          Length = 88

 Score =  151 bits (76), Expect = 1e-37
 Identities = 86/88 (97%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagatccttt-ttataactctaatact 59
          ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttctgataactctaatact 60

                                      
Query: 60 gtcaggtaaagatgtcgtccgtgtcctt 87
          ||||||||||||||||||||||||||||
Sbjct: 61 gtcaggtaaagatgtcgtccgtgtcctt 88




>36836_dpe-mir-8:mirbase
          Length = 87

 Score =  149 bits (75), Expect = 4e-37
 Identities = 84/87 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
          |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttagatacctctaatactg 60

                                     
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
          |||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87




>36912_dps-mir-8:mirbase
          Length = 87

 Score =  149 bits (75), Expect = 4e-37
 Identities = 84/87 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttttataactctaatactg 60
          |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagatcctttagatacctctaatactg 60

                                     
Query: 61 tcaggtaaagatgtcgtccgtgtcctt 87
          |||||||||||||||||||||||||||
Sbjct: 61 tcaggtaaagatgtcgtccgtgtcctt 87




>36763_dmo-mir-8:mirbase
          Length = 90

 Score =  127 bits (64), Expect = 1e-30
 Identities = 85/90 (94%), Gaps = 4/90 (4%)
 Strand = Plus / Plus

                                                                      
Query: 2  aggacatctgttcacatcttaccgggcagcattagat-ccttttt---ataactctaata 57
          ||||||||||||||||||||||||||||||||||||| ||| |||   ||||||||||||
Sbjct: 1  aggacatctgttcacatcttaccgggcagcattagattcctgttttaaataactctaata 60

                                        
Query: 58 ctgtcaggtaaagatgtcgtccgtgtcctt 87
          ||||||||||||||||||||||||||||||
Sbjct: 61 ctgtcaggtaaagatgtcgtccgtgtcctt 90




>36253_dgr-mir-8:mirbase
          Length = 91

 Score =  121 bits (61), Expect = 9e-29
 Identities = 85/91 (93%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagatcctt--ttt--ataactctaat 56
          |||||||||||||||||||||||||||||||||||||| |||  |||  |||| ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60

                                         
Query: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87
          |||||||||||||||||||||||||||||||
Sbjct: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91




>37339_dvi-mir-8:mirbase
          Length = 91

 Score =  121 bits (61), Expect = 9e-29
 Identities = 85/91 (93%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattagatcctt--ttt--ataactctaat 56
          |||||||||||||||||||||||||||||||||||||| |||  |||  |||| ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagattcttgatttaaataattctaat 60

                                         
Query: 57 actgtcaggtaaagatgtcgtccgtgtcctt 87
          |||||||||||||||||||||||||||||||
Sbjct: 61 actgtcaggtaaagatgtcgtccgtgtcctt 91




>37414_dwi-mir-8:mirbase
          Length = 92

 Score =  103 bits (52), Expect = 2e-23
 Identities = 82/92 (89%), Gaps = 5/92 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaggacatctgttcacatcttaccgggcagcattaga-----tcctttttataactctaa 55
          |||||||||||||||||||||||||||||||||||||     | || |  ||| ||||||
Sbjct: 1  aaggacatctgttcacatcttaccgggcagcattagattttgtactatagatatctctaa 60

                                          
Query: 56 tactgtcaggtaaagatgtcgtccgtgtcctt 87
          ||||||||||||||||||||||||||||||||
Sbjct: 61 tactgtcaggtaaagatgtcgtccgtgtcctt 92




>36006_cqu-mir-8:mirbase
          Length = 77

 Score = 95.6 bits (48), Expect = 5e-21
 Identities = 69/75 (92%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                      
Query: 8  tctgttcacatcttaccgggcagcattagatccttttt--ataactctaatactgtcagg 65
          |||||||||||||||||||||||||||||||  |||||  |||  |||||||||||||||
Sbjct: 2  tctgttcacatcttaccgggcagcattagatattttttaaatacttctaatactgtcagg 61

                         
Query: 66 taaagatgtcgtccg 80
          |||||||||||||||
Sbjct: 62 taaagatgtcgtccg 76




>35171_aae-mir-8:mirbase
          Length = 79

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 68/75 (90%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                      
Query: 8  tctgttcacatcttaccgggcagcattagatcctttt--tataactctaatactgtcagg 65
          |||||||||||||||||||||||||||||||  ||||   |||  |||||||||||||||
Sbjct: 2  tctgttcacatcttaccgggcagcattagatatttttgaaatacttctaatactgtcagg 61

                         
Query: 66 taaagatgtcgtccg 80
          |||||||||||||||
Sbjct: 62 taaagatgtcgtccg 76




>37695_tca-mir-8:mirbase
          Length = 73

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 62/68 (91%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcaggta 67
          ||||| ||||||||||||||||||||||| | | |||||||  |||||||||||||||||
Sbjct: 2  ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61

                  
Query: 68 aagatgtc 75
          ||||||||
Sbjct: 62 aagatgtc 69




>37696_tca-mir-8:mirbase
          Length = 73

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 62/68 (91%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcaggta 67
          ||||| ||||||||||||||||||||||| | | |||||||  |||||||||||||||||
Sbjct: 2  ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61

                  
Query: 68 aagatgtc 75
          ||||||||
Sbjct: 62 aagatgtc 69




>35274_aga-mir-8:mirbase
          Length = 86

 Score = 75.8 bits (38), Expect = 5e-15
 Identities = 67/76 (88%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                      
Query: 8  tctgttcacatcttaccgggcagcattagatccttttt---ataactctaatactgtcag 64
          |||||||||||||||||||||||||||||||   || |   |||  ||||||||||||||
Sbjct: 6  tctgttcacatcttaccgggcagcattagatatgttatcggatatttctaatactgtcag 65

                          
Query: 65 gtaaagatgtcgtccg 80
          ||||||||||||||||
Sbjct: 66 gtaaagatgtcgtccg 81




>35518_bmo-mir-8:mirbase
          Length = 102

 Score = 71.9 bits (36), Expect = 7e-14
 Identities = 65/72 (90%), Gaps = 2/72 (2%)
 Strand = Plus / Plus

                                                                      
Query: 11 gttcacatcttaccgggcagcattaga-tcctttttataact-ctaatactgtcaggtaa 68
          |||| |||||||||||||||||||||| |||| | ||||  | |||||||||||||||||
Sbjct: 16 gttcgcatcttaccgggcagcattagagtcctgtctatattttctaatactgtcaggtaa 75

                      
Query: 69 agatgtcgtccg 80
          ||||||||||||
Sbjct: 76 agatgtcgtccg 87




>37602_nlo-mir-8:mirbase
          Length = 86

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 64/73 (87%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  atctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcagg 65
          ||||||| ||||||||||||||||||||||| | | ||| |    |||||||||||||||
Sbjct: 6  atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65

                       
Query: 66 taaagatgtcgtc 78
          |||||||||||||
Sbjct: 66 taaagatgtcgtc 78




>37635_nvi-mir-8:mirbase
          Length = 86

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 64/73 (87%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  atctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcagg 65
          ||||||| ||||||||||||||||||||||| | | ||| |    |||||||||||||||
Sbjct: 6  atctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcagg 65

                       
Query: 66 taaagatgtcgtc 78
          |||||||||||||
Sbjct: 66 taaagatgtcgtc 78




>35344_ame-mir-8:mirbase
          Length = 85

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 7  atctgttcacatcttaccgggcagcattagat 38
          ||||||||||||||||||||||||||||||||
Sbjct: 6  atctgttcacatcttaccgggcagcattagat 37




>34999_dpu-mir-8:mirbase
          Length = 98

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 51 tctaatactgtcaggtaaagatgtcgtccgtg 82
          ||||||||||||||||||||||||| ||||||
Sbjct: 59 tctaatactgtcaggtaaagatgtcctccgtg 90



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 catcttaccgggcagcattagat 38
          |||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagat 32




>38851_lgi-mir-8:mirbase
          Length = 98

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 tctaatactgtcaggtaaagatgtc 75
          |||||||||||||||||||||||||
Sbjct: 59 tctaatactgtcaggtaaagatgtc 83




>38728_cte-mir-8:mirbase
          Length = 98

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 tctaatactgtcaggtaaagatgtc 75
          |||||||||||||||||||||||||
Sbjct: 58 tctaatactgtcaggtaaagatgtc 82




>34963_isc-mir-8:mirbase
          Length = 94

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 51 tctaatactgtcaggtaaagatgtc 75
          |||||||||||||||||||||||||
Sbjct: 56 tctaatactgtcaggtaaagatgtc 80




>37561_lmi-mir-8:mirbase
          Length = 61

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 16 catcttaccgggcagcattagat 38
          |||||||||||||||||||||||
Sbjct: 1  catcttaccgggcagcattagat 23



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 51 tctaatactgtcaggtaaagatgtc 75
          |||||||||||||||||| ||||||
Sbjct: 37 tctaatactgtcaggtaacgatgtc 61




>35047_api-mir-8:mirbase
          Length = 63

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 51 tctaatactgtcaggtaaagatgtc 75
          |||||||||||||||||| ||||||
Sbjct: 39 tctaatactgtcaggtaatgatgtc 63




>39065_sme-mir-8a:mirbase
          Length = 70

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 51 tctaatactgtcaggtaaagatg 73
          |||||||||||||||||| ||||
Sbjct: 43 tctaatactgtcaggtaacgatg 65




>38969_sja-mir-8:mirbase
          Length = 76

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 51 tctaatactgtcaggtaaagatg 73
          ||||||||||| |||||||||||
Sbjct: 42 tctaatactgttaggtaaagatg 64




>38968_sja-mir-8:mirbase
          Length = 76

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 51 tctaatactgtcaggtaaagatg 73
          ||||||||||| |||||||||||
Sbjct: 42 tctaatactgttaggtaaagatg 64




>38211_cbr-mir-236:mirbase
          Length = 100

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 50 ctctaatactgtcaggtaa 68
          |||||||||||||||||||
Sbjct: 58 ctctaatactgtcaggtaa 76