miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37521_dya-mir-263b-2:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60

                                      
Query: 61 tgcgggtgccaaaatttaatcaacggct 88
          ||||||||||||||||||||||||||||
Sbjct: 61 tgcgggtgccaaaatttaatcaacggct 88




>36192_der-mir-263b:mirbase
          Length = 89

 Score =  157 bits (79), Expect = 2e-39
 Identities = 82/83 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2  gctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttct 61
          |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3  gctgactttgagtcttggcactgggagaattcacagttgattttattattctgtggttct 62

                                 
Query: 62 gcgggtgccaaaatttaatcaac 84
          |||||||||||||||||||||||
Sbjct: 63 gcgggtgccaaaatttaatcaac 85




>36407_dme-mir-263b:mirbase
          Length = 90

 Score =  149 bits (75), Expect = 4e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 61

                             
Query: 61 tgcgggtgccaaaatttaa 79
          |||||||||||||| ||||
Sbjct: 62 tgcgggtgccaaaacttaa 80




>36408_dme-mir-263b:mirbase
          Length = 90

 Score =  149 bits (75), Expect = 4e-37
 Identities = 78/79 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 61

                             
Query: 61 tgcgggtgccaaaatttaa 79
          |||||||||||||| ||||
Sbjct: 62 tgcgggtgccaaaacttaa 80




>37152_dse-mir-263b:mirbase
          Length = 90

 Score =  141 bits (71), Expect = 9e-35
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2  tgctgactttgagtcttggcactgggagaattcacagttgacttgattattctgtggttc 61

                             
Query: 61 tgcgggtgccaaaatttaa 79
          |||||||||||||| ||||
Sbjct: 62 tgcgggtgccaaaacttaa 80




>37231_dsi-mir-263b:mirbase
          Length = 90

 Score =  141 bits (71), Expect = 9e-35
 Identities = 77/79 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2  tgctgactttgagtcttggcactgggagaattcacagttgacttgattattctgtggttc 61

                             
Query: 61 tgcgggtgccaaaatttaa 79
          |||||||||||||| ||||
Sbjct: 62 tgcgggtgccaaaacttaa 80




>36114_dan-mir-263b:mirbase
          Length = 89

 Score =  127 bits (64), Expect = 1e-30
 Identities = 73/76 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgctgactttgagtcttggcactgggagaattcacagttgactttattattctgtggttc 60
          ||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1  tgctgtctttgaatcttggcactgggagaattcacagttgattttattattctgtggttc 60

                          
Query: 61 tgcgggtgccaaaatt 76
          ||||||||||||||||
Sbjct: 61 tgcgggtgccaaaatt 76




>36281_dgr-mir-263b:mirbase
          Length = 75

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 57/62 (91%), Gaps = 2/62 (3%)
 Strand = Plus / Plus

                                                                      
Query: 14 tcttggcactgggagaattcacagttgactttat--tattctgtggttctgcgggtgcca 71
          |||||||||||||||||||||||||||  | |||  ||||||||||||||||||||||||
Sbjct: 8  tcttggcactgggagaattcacagttggttatataatattctgtggttctgcgggtgcca 67

            
Query: 72 aa 73
          ||
Sbjct: 68 aa 69




>37445_dwi-mir-263b:mirbase
          Length = 70

 Score = 75.8 bits (38), Expect = 5e-15
 Identities = 61/67 (91%), Gaps = 5/67 (7%)
 Strand = Plus / Plus

                                                                      
Query: 14 tcttggcactgggagaattcacagttgact-ttat----tattctgtggttctgcgggtg 68
          |||||||||||||||||||||||||||| | ||||    |||||||||||||||||||||
Sbjct: 2  tcttggcactgggagaattcacagttgattcttattcgatattctgtggttctgcgggtg 61

                 
Query: 69 ccaaaat 75
          |||||||
Sbjct: 62 ccaaaat 68




>37366_dvi-mir-263b:mirbase
          Length = 71

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 58/64 (90%), Gaps = 2/64 (3%)
 Strand = Plus / Plus

                                                                      
Query: 14 tcttggcactgggagaattcacagttgactttat--tattctgtggttctgcgggtgcca 71
          ||||||||||||||||||||||||| || |  ||  ||||||||||||||||||||||||
Sbjct: 5  tcttggcactgggagaattcacagtcgattacataatattctgtggttctgcgggtgcca 64

              
Query: 72 aaat 75
          ||||
Sbjct: 65 aaat 68




>36945_dps-mir-263b:mirbase
          Length = 91

 Score = 71.9 bits (36), Expect = 7e-14
 Identities = 59/64 (92%), Gaps = 2/64 (3%)
 Strand = Plus / Plus

                                                                      
Query: 14 tcttggcactgggagaattcacagttgacttt-at-tattctgtggttctgcgggtgcca 71
          |||||||||||||||||||||||||||  ||  || ||||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttggtttccatatattctgtggttctgcgggtgcca 74

              
Query: 72 aaat 75
          ||||
Sbjct: 75 aaat 78




>36866_dpe-mir-263b:mirbase
          Length = 92

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 55/59 (93%), Gaps = 2/59 (3%)
 Strand = Plus / Plus

                                                                     
Query: 14 tcttggcactgggagaattcacagttgacttt-at-tattctgtggttctgcgggtgcc 70
          |||||||||||||||||||||||||||  ||| || |||||||||||||||||||||||
Sbjct: 15 tcttggcactgggagaattcacagttggttttcatatattctgtggttctgcgggtgcc 73




>35298_aga-mir-263b:mirbase
          Length = 96

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 15 cttggcactgggagaattcacagt 38
          ||||||||||||||||||||||||
Sbjct: 16 cttggcactgggagaattcacagt 39




>35203_aae-mir-263b:mirbase
          Length = 91

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 15 cttggcactgggagaattcacag 37
          |||||||||||||||||||||||
Sbjct: 15 cttggcactgggagaattcacag 37




>35546_bmo-mir-263b:mirbase
          Length = 89

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 15 cttggcactgggagaattcacag 37
          |||||||||||||||||||||||
Sbjct: 15 cttggcactgggagaattcacag 37




>35378_ame-mir-263b:mirbase
          Length = 91

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 13 gtcttggcactgggagaattcacag 37
          ||||||||||||| |||||||||||
Sbjct: 14 gtcttggcactggaagaattcacag 38




>37585_ngi-mir-263b:mirbase
          Length = 86

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 13 gtcttggcactgggagaattcacag 37
          ||||||||||||| |||||||||||
Sbjct: 13 gtcttggcactggaagaattcacag 37




>37616_nlo-mir-263b:mirbase
          Length = 86

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 13 gtcttggcactgggagaattcacag 37
          ||||||||||||| |||||||||||
Sbjct: 13 gtcttggcactggaagaattcacag 37




>37658_nvi-mir-263b:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 13 gtcttggcactgggagaattcacag 37
          ||||||||||||| |||||||||||
Sbjct: 8  gtcttggcactggaagaattcacag 32