miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36212_der-mir-305:mirbase
          Length = 73

 Score =  137 bits (69), Expect = 1e-33
 Identities = 72/73 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtggtccgtaacccggcacatgttgaag 60

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 61 tacactcaatatg 73




>36445_dme-mir-305:mirbase
          Length = 73

 Score =  129 bits (65), Expect = 3e-31
 Identities = 71/73 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtgtctcgtaacccggcacatgttgaag 60

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 61 tacactcaatatg 73




>36446_dme-mir-305:mirbase
          Length = 73

 Score =  129 bits (65), Expect = 3e-31
 Identities = 71/73 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtgtctcgtaacccggcacatgttgaag 60

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 61 tacactcaatatg 73




>36884_dpe-mir-305:mirbase
          Length = 73

 Score =  129 bits (65), Expect = 3e-31
 Identities = 71/73 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtgtcctgtaacccggcacatgttgaag 60

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 61 tacactcaatatg 73




>36966_dps-mir-305:mirbase
          Length = 73

 Score =  129 bits (65), Expect = 3e-31
 Identities = 71/73 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtgtcctgtaacccggcacatgttgaag 60

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 61 tacactcaatatg 73




>37172_dse-mir-305:mirbase
          Length = 73

 Score =  129 bits (65), Expect = 3e-31
 Identities = 71/73 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtgtctcgtaacccggcacatgttgaag 60

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 61 tacactcaatatg 73




>36134_dan-mir-305:mirbase
          Length = 73

 Score =  121 bits (61), Expect = 7e-29
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtccaccgtaacccggcacatgttgaag 60

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 61 tacactcaatatg 73




>36302_dgr-mir-305:mirbase
          Length = 73

 Score =  121 bits (61), Expect = 7e-29
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtcactcgtaacccggcacatgttgaag 60

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 61 tacactcaatatg 73




>37385_dvi-mir-305:mirbase
          Length = 73

 Score =  121 bits (61), Expect = 7e-29
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtgacttgtaacccggcacatgttgaag 60

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 61 tacactcaatatg 73




>37249_dsi-mir-305:mirbase
          Length = 72

 Score =  105 bits (53), Expect = 4e-24
 Identities = 69/73 (94%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          |||||||||||||||||||||| |||||||||||| | |||||||||||||||| |||||
Sbjct: 1  catgtctattgtacttcatcag-tgctctggtgtgtctcgtaacccggcacatgctgaag 59

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 60 tacactcaatatg 72




>37464_dwi-mir-305:mirbase
          Length = 74

 Score = 99.6 bits (50), Expect = 3e-22
 Identities = 69/74 (93%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgt-ggcccgtaacccggcacatgttgaa 59
          ||||||||||||||||||||||||||||||||||  |   ||||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtccgtttgtaacccggcacatgttgaa 60

                        
Query: 60 gtacactcaatatg 73
          ||||||||||||||
Sbjct: 61 gtacactcaatatg 74




>36808_dmo-mir-305:mirbase
          Length = 73

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtggcccgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||     | |||||||||||||||||||
Sbjct: 1  catgtctattgtacttcatcaggtgctctggtgtcagtggaaacccggcacatgttgaag 60

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 61 tacactcaatatg 73




>35309_aga-mir-305:mirbase
          Length = 90

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 1  catgtctattgtacttcatcaggtgctctggtg 33
          |||||||||||||||||||||||||||||||||
Sbjct: 8  catgtctattgtacttcatcaggtgctctggtg 40




>35218_aae-mir-305:mirbase
          Length = 88

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  catgtctattgtacttcatcaggtgctctggt 32
          ||||||||||||||||||||||||||||||||
Sbjct: 8  catgtctattgtacttcatcaggtgctctggt 39




>36041_cqu-mir-305:mirbase
          Length = 88

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  catgtctattgtacttcatcaggtgctctggt 32
          ||||||||||||||||||||||||||||||||
Sbjct: 8  catgtctattgtacttcatcaggtgctctggt 39




>37788_tca-mir-305:mirbase
          Length = 75

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  catgtctattgtacttcatcaggtgctctggt 32
          ||||||||||||||||||||||||||||||||
Sbjct: 3  catgtctattgtacttcatcaggtgctctggt 34




>37789_tca-mir-305:mirbase
          Length = 75

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  catgtctattgtacttcatcaggtgctctggt 32
          ||||||||||||||||||||||||||||||||
Sbjct: 3  catgtctattgtacttcatcaggtgctctggt 34




>35389_ame-mir-305:mirbase
          Length = 90

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 8  attgtacttcatcaggtgctctggtg 33
          ||||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggtg 41




>35561_bmo-mir-305:mirbase
          Length = 91

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 8  attgtacttcatcaggtgctctggtg 33
          ||||||||||||||||||||||||||
Sbjct: 17 attgtacttcatcaggtgctctggtg 42




>37591_ngi-mir-305:mirbase
          Length = 88

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 8  attgtacttcatcaggtgctctggtg 33
          ||||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggtg 41




>37622_nlo-mir-305:mirbase
          Length = 88

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 8  attgtacttcatcaggtgctctggtg 33
          ||||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggtg 41




>37666_nvi-mir-305:mirbase
          Length = 90

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 8  attgtacttcatcaggtgctctggtg 33
          ||||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggtg 41




>34984_isc-mir-305:mirbase
          Length = 90

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  attgtacttcatcaggtgctctgg 31
          ||||||||||||||||||||||||
Sbjct: 14 attgtacttcatcaggtgctctgg 37