miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36216_der-mir-309:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttctgttttgccaatttcctagccagcactgggtaaagtttg 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttcctagccagcactgggtaaagtttg 60
Query: 61 tcctataat 69
|||||||||
Sbjct: 61 tcctataat 69
>36455_dme-mir-309:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttctgttttgccaatttcctagccagcactgggtaaagtttg 60
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
Query: 61 tcctataat 69
|||||||||
Sbjct: 61 tcctataat 69
>36456_dme-mir-309:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttctgttttgccaatttcctagccagcactgggtaaagtttg 60
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
Query: 61 tcctataat 69
|||||||||
Sbjct: 61 tcctataat 69
>37176_dse-mir-309:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttctgttttgccaatttcctagccagcactgggtaaagtttg 60
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
Query: 61 tcctataat 69
|||||||||
Sbjct: 61 tcctataat 69
>37252_dsi-mir-309:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttctgttttgccaatttcctagccagcactgggtaaagtttg 60
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
Query: 61 tcctataat 69
|||||||||
Sbjct: 61 tcctataat 69
>36138_dan-mir-309:mirbase
Length = 68
Score = 113 bits (57), Expect = 2e-26
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttctgttttgccaatttcctagccagcactgggtaaagtttg 60
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 1 attatacgacaaaccttgttcggttttgccaatttcctag-cagcactgggtaaagtttg 59
Query: 61 tcctataat 69
|||||||||
Sbjct: 60 tcctataat 68
>36888_dpe-mir-309:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 8e-10
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttctgttttgccaatttcctagccagcactgggtaaagtttg 60
||||||||| |||| |||||| |||||||||| || || || |||||||||| |||||||
Sbjct: 1 attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59
Query: 61 tcctataat 69
|| ||||||
Sbjct: 60 tcttataat 68
>36971_dps-mir-309:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 8e-10
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttctgttttgccaatttcctagccagcactgggtaaagtttg 60
||||||||| |||| |||||| |||||||||| || || || |||||||||| |||||||
Sbjct: 1 attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59
Query: 61 tcctataat 69
|| ||||||
Sbjct: 60 tcttataat 68
