miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36223_der-mir-312-1:mirbase
Length = 66
Score = 93.7 bits (47), Expect = 1e-20
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 gcttcggttcgtcccaggagcaattctgcactattaaagctagtattgcacttgagacgg 60
|||||||||||| ||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct: 1 gcttcggttcgtaccaggagcaattctgcatttttaa-gctagtattgcacttgagacgg 59
Query: 61 ccggatt 67
|||||||
Sbjct: 60 ccggatt 66
>36224_der-mir-312-2:mirbase
Length = 69
Score = 83.8 bits (42), Expect = 1e-17
Identities = 63/69 (91%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 1 gcttcggttcgtcccaggagcaattctgcactatta--aagctagtattgcacttgagac 58
|||||||||||| ||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 1 gcttcggttcgtaccaggagcaattctgcattttttttaagctagtattgcacttgagac 60
Query: 59 ggccggatt 67
|||||||||
Sbjct: 61 ggccggatt 69
>36461_dme-mir-312:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 5e-08
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 ggttcgtcccaggagcaattctgcactattaaagctagtattgcacttgagacggccgga 65
|||||||| || | ||||||||||| | || || ||||||||||||||||||||||| ||
Sbjct: 6 ggttcgtcacaagggcaattctgcattttttaa-ctagtattgcacttgagacggcctga 64
Query: 66 tt 67
||
Sbjct: 65 tt 66
>36462_dme-mir-312:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 5e-08
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 ggttcgtcccaggagcaattctgcactattaaagctagtattgcacttgagacggccgga 65
|||||||| || | ||||||||||| | || || ||||||||||||||||||||||| ||
Sbjct: 6 ggttcgtcacaagggcaattctgcattttttaa-ctagtattgcacttgagacggcctga 64
Query: 66 tt 67
||
Sbjct: 65 tt 66
>37179_dse-mir-312:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 5e-08
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 6 ggttcgtcccaggagcaattctgcactattaaagctagtattgcacttgagacggccg 63
|||||||| || | ||||||||||| | ||||| || |||||||||||||||||||||
Sbjct: 6 ggttcgtcacaagggcaattctgcatttttaaa-cttgtattgcacttgagacggccg 62
>37255_dsi-mir-312:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 5e-08
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 6 ggttcgtcccaggagcaattctgcactattaaagctagtattgcacttgagacggccg 63
|||||||| || | ||||||||||| | ||||| || |||||||||||||||||||||
Sbjct: 6 ggttcgtcacaagggcaattctgcatttttaaa-cttgtattgcacttgagacggccg 62
>36142_dan-mir-312:mirbase
Length = 57
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 agtattgcacttgagacggcc 62
|||||||||||||||||||||
Sbjct: 37 agtattgcacttgagacggcc 57
