miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37670_nvi-mir-375:mirbase
Length = 102
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 tggtccatcgatcccaacgatcaataaactgtgttattaaacaagtttgttcgttcggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 tggtccatcgatcccaacgatcaataaactgtgttattaaacaagtttgttcgttcggct 79
Query: 61 cgagttat 68
||||||||
Sbjct: 80 cgagttat 87
>35396_ame-mir-375:mirbase
Length = 100
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 43 aagtttgttcgttcggctcgagttatca 70
||||||||||||||||||||||||||||
Sbjct: 60 aagtttgttcgttcggctcgagttatca 87
>34988_isc-mir-375:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 tttgttcgttcggctcgagtta 67
||||||||||||||||||||||
Sbjct: 61 tttgttcgttcggctcgagtta 82
>35229_aae-mir-375:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 aagtttgttcgttcggctcgagttat 68
||||||||||||| ||||||||||||
Sbjct: 75 aagtttgttcgtttggctcgagttat 100
>35316_aga-mir-375-1:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 agtttgttcgttcggctcgagttat 68
|||||||||||| ||||||||||||
Sbjct: 65 agtttgttcgtttggctcgagttat 89
>35317_aga-mir-375-2:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 agtttgttcgttcggctcgagttat 68
|||||||||||| ||||||||||||
Sbjct: 65 agtttgttcgtttggctcgagttat 89
>36048_cqu-mir-375:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 agtttgttcgttcggctcgagttat 68
|||||||||||| ||||||||||||
Sbjct: 67 agtttgttcgtttggctcgagttat 91
>24704_bfl-mir-375:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 46 tttgttcgttcggctcgagttatc 69
||||||||||||||||| ||||||
Sbjct: 61 tttgttcgttcggctcgcgttatc 84
>34651_fru-mir-375:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tttgttcgttcggctcgagttat 68
||||||||||||||||| |||||
Sbjct: 49 tttgttcgttcggctcgcgttat 71
>34799_tni-mir-375:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 46 tttgttcgttcggctcgagttat 68
||||||||||||||||| |||||
Sbjct: 49 tttgttcgttcggctcgcgttat 71
>35033_dpu-mir-375:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 gtttgttcgttcggctcgagtta 67
|||||||||||||||| ||||||
Sbjct: 60 gtttgttcgttcggcttgagtta 82
