miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37605_nlo-mir-12:mirbase
Length = 64
Score = 85.7 bits (43), Expect = 5e-18
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 8 gggtgtgagtattacatcaggtactggtgtcnnnnnnncagcgaccagtacttgtgttat 67
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gggtgtgagtattacatcaggtactggtgtctttttttcagcgaccagtacttgtgttat 60
Query: 68 actt 71
||||
Sbjct: 61 actt 64
>35351_ame-mir-12:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 8 gggtgtgagtattacatcaggtactggtgt 37
||||||||||||||||||||||||||||||
Sbjct: 8 gggtgtgagtattacatcaggtactggtgt 37
>35179_aae-mir-12:mirbase
Length = 102
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgtc 38
||||||||||||||||||||||||||
Sbjct: 8 tgagtattacatcaggtactggtgtc 33
>35280_aga-mir-12:mirbase
Length = 117
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 gtgagtattacatcaggtactggtgt 37
||||||||||||||||||||||||||
Sbjct: 6 gtgagtattacatcaggtactggtgt 31
>36010_cqu-mir-12:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgtc 38
||||||||||||||||||||||||||
Sbjct: 66 tgagtattacatcaggtactggtgtc 91
>36093_dan-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>36171_der-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>36259_dgr-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>36357_dme-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>36358_dme-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>36769_dmo-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>36842_dpe-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>36918_dps-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>37131_dse-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>37207_dsi-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>37345_dvi-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>37422_dwi-mir-12:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggtgt 37
|||||||||||||||||||||||||
Sbjct: 7 tgagtattacatcaggtactggtgt 31
>37709_tca-mir-12:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 agggtgtgagtattacatcaggtactggt 35
||||| |||||||||||||||||||||||
Sbjct: 10 agggtttgagtattacatcaggtactggt 38
>37710_tca-mir-12:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 agggtgtgagtattacatcaggtactggt 35
||||| |||||||||||||||||||||||
Sbjct: 10 agggtttgagtattacatcaggtactggt 38
>35002_dpu-mir-12:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gtgagtattacatcaggtactggt 35
||||||||||||||||||||||||
Sbjct: 20 gtgagtattacatcaggtactggt 43
>34965_isc-mir-12:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggt 35
|||||||||||||||||||||||
Sbjct: 21 tgagtattacatcaggtactggt 43
>38854_lgi-mir-12:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 gtgagtattacatcaggtactg 33
||||||||||||||||||||||
Sbjct: 20 gtgagtattacatcaggtactg 41
>38734_cte-mir-12:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactg 33
|||||||||||||||||||||
Sbjct: 21 tgagtattacatcaggtactg 41
>35525_bmo-mir-12:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 tgagtattacatcaggtactggt 35
|||||||||| ||||||||||||
Sbjct: 4 tgagtattacttcaggtactggt 26
